Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Usp28Q5I043 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC20.85■□□□□ 0.93
Usp28Q5I043 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp28Q5I043 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
Usp28Q5I043 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp28Q5I043 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Usp28Q5I043 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Usp28Q5I043 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Usp28Q5I043 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp28Q5I043 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp28Q5I043 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp28Q5I043 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Usp28Q5I043 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.84■□□□□ 0.93
Usp28Q5I043 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp28Q5I043 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp28Q5I043 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
Usp28Q5I043 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Usp28Q5I043 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Usp28Q5I043 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Usp28Q5I043 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.83■□□□□ 0.93
Usp28Q5I043 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Usp28Q5I043 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp28Q5I043 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.92
Usp28Q5I043 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.83■□□□□ 0.92
Usp28Q5I043 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usp28Q5I043 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp28Q5I043 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp28Q5I043 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp28Q5I043 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp28Q5I043 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.82■□□□□ 0.92
Usp28Q5I043 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp28Q5I043 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp28Q5I043 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.82■□□□□ 0.92
Usp28Q5I043 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.82■□□□□ 0.92
Usp28Q5I043 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.81■□□□□ 0.92
Usp28Q5I043 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp28Q5I043 Tgds-204ENSMUST00000228543 1594 ntBASIC20.81■□□□□ 0.92
Usp28Q5I043 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp28Q5I043 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp28Q5I043 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp28Q5I043 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp28Q5I043 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC20.81■□□□□ 0.92
Usp28Q5I043 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp28Q5I043 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp28Q5I043 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp28Q5I043 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp28Q5I043 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Usp28Q5I043 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp28Q5I043 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp28Q5I043 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp28Q5I043 Gm42900-201ENSMUST00000197184 2167 ntBASIC20.8■□□□□ 0.92
Usp28Q5I043 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp28Q5I043 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp28Q5I043 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC20.79■□□□□ 0.92
Usp28Q5I043 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp28Q5I043 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp28Q5I043 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
Usp28Q5I043 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp28Q5I043 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC20.79■□□□□ 0.92
Usp28Q5I043 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp28Q5I043 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.79■□□□□ 0.92
Usp28Q5I043 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Usp28Q5I043 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp28Q5I043 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp28Q5I043 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC20.79■□□□□ 0.92
Usp28Q5I043 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Usp28Q5I043 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp28Q5I043 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp28Q5I043 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp28Q5I043 Gm43702-201ENSMUST00000198772 2546 ntBASIC20.78■□□□□ 0.92
Usp28Q5I043 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp28Q5I043 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Usp28Q5I043 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp28Q5I043 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp28Q5I043 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp28Q5I043 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Usp28Q5I043 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp28Q5I043 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp28Q5I043 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp28Q5I043 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC20.78■□□□□ 0.92
Usp28Q5I043 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp28Q5I043 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp28Q5I043 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Usp28Q5I043 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp28Q5I043 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.77■□□□□ 0.92
Usp28Q5I043 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp28Q5I043 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp28Q5I043 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Usp28Q5I043 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Usp28Q5I043 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp28Q5I043 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Usp28Q5I043 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp28Q5I043 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp28Q5I043 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.76■□□□□ 0.91
Usp28Q5I043 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp28Q5I043 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp28Q5I043 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp28Q5I043 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Usp28Q5I043 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Usp28Q5I043 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 7.8 ms