Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3bQ3ULL6 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3bQ3ULL6 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3bQ3ULL6 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3bQ3ULL6 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Upf3bQ3ULL6 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3bQ3ULL6 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Upf3bQ3ULL6 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Upf3bQ3ULL6 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Upf3bQ3ULL6 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Upf3bQ3ULL6 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Upf3bQ3ULL6 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Upf3bQ3ULL6 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.58■□□□□ 0.72
Upf3bQ3ULL6 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Upf3bQ3ULL6 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf3bQ3ULL6 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3bQ3ULL6 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3bQ3ULL6 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3bQ3ULL6 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3bQ3ULL6 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Upf3bQ3ULL6 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.56■□□□□ 0.72
Upf3bQ3ULL6 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3bQ3ULL6 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3bQ3ULL6 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3bQ3ULL6 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3bQ3ULL6 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3bQ3ULL6 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Upf3bQ3ULL6 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms