Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.76■□□□□ 0.43
Col28a1Q2UY11 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Gm40848-201ENSMUST00000221998 324 ntBASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col28a1Q2UY11 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col28a1Q2UY11 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col28a1Q2UY11 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Gm10849-201ENSMUST00000100397 618 ntBASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Gm37179-201ENSMUST00000194862 823 ntBASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col28a1Q2UY11 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 AC112142.1-201ENSMUST00000228796 918 ntBASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col28a1Q2UY11 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms