Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.15■□□□□ 0.5
Shox2P70390 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
Shox2P70390 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC18.15■□□□□ 0.5
Shox2P70390 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
Shox2P70390 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC18.15■□□□□ 0.5
Shox2P70390 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shox2P70390 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Shox2P70390 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Shox2P70390 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shox2P70390 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shox2P70390 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
Shox2P70390 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Shox2P70390 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Shox2P70390 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Shox2P70390 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Shox2P70390 Gm37805-201ENSMUST00000192612 1094 ntBASIC18.14■□□□□ 0.49
Shox2P70390 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.14■□□□□ 0.49
Shox2P70390 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Shox2P70390 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shox2P70390 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC18.14■□□□□ 0.49
Shox2P70390 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shox2P70390 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shox2P70390 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
Shox2P70390 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Shox2P70390 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shox2P70390 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shox2P70390 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.13■□□□□ 0.49
Shox2P70390 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Shox2P70390 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shox2P70390 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shox2P70390 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shox2P70390 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shox2P70390 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Shox2P70390 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shox2P70390 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shox2P70390 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Shox2P70390 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Shox2P70390 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Shox2P70390 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC18.12■□□□□ 0.49
Shox2P70390 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shox2P70390 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC18.12■□□□□ 0.49
Shox2P70390 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shox2P70390 Gm15039-201ENSMUST00000118914 875 ntBASIC18.12■□□□□ 0.49
Shox2P70390 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.12■□□□□ 0.49
Shox2P70390 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shox2P70390 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shox2P70390 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shox2P70390 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shox2P70390 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shox2P70390 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shox2P70390 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shox2P70390 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shox2P70390 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shox2P70390 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Shox2P70390 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Shox2P70390 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shox2P70390 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Shox2P70390 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC18.11■□□□□ 0.49
Shox2P70390 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Shox2P70390 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
Shox2P70390 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shox2P70390 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shox2P70390 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Shox2P70390 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shox2P70390 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Shox2P70390 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shox2P70390 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shox2P70390 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.1■□□□□ 0.49
Shox2P70390 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shox2P70390 Gm7860-201ENSMUST00000121190 879 ntBASIC18.1■□□□□ 0.49
Shox2P70390 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC18.1■□□□□ 0.49
Shox2P70390 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Shox2P70390 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Shox2P70390 Gm5921-201ENSMUST00000075898 882 ntBASIC18.1■□□□□ 0.49
Shox2P70390 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shox2P70390 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shox2P70390 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Shox2P70390 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shox2P70390 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
Shox2P70390 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Shox2P70390 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.1■□□□□ 0.49
Shox2P70390 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.09■□□□□ 0.49
Shox2P70390 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.09■□□□□ 0.49
Shox2P70390 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 15 ms