Protein–RNA interactions for Protein: P56183

Rrp1, Ribosomal RNA processing protein 1 homolog A, mousemouse

Known RBP Predictions only

Length 494 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rrp1P56183 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Rrp1P56183 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rrp1P56183 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rrp1P56183 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.66■□□□□ 0.9
Rrp1P56183 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rrp1P56183 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rrp1P56183 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Rrp1P56183 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.66■□□□□ 0.9
Rrp1P56183 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Rrp1P56183 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Rrp1P56183 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rrp1P56183 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Rrp1P56183 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rrp1P56183 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Rrp1P56183 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.65■□□□□ 0.9
Rrp1P56183 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20.65■□□□□ 0.9
Rrp1P56183 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rrp1P56183 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Rrp1P56183 Gm19439-201ENSMUST00000198195 2273 ntBASIC20.65■□□□□ 0.9
Rrp1P56183 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Rrp1P56183 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rrp1P56183 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Rrp1P56183 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.65■□□□□ 0.9
Rrp1P56183 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rrp1P56183 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Rrp1P56183 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.65■□□□□ 0.9
Rrp1P56183 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Rrp1P56183 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.65■□□□□ 0.9
Rrp1P56183 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.65■□□□□ 0.9
Rrp1P56183 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rrp1P56183 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.65■□□□□ 0.9
Rrp1P56183 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Rrp1P56183 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rrp1P56183 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Rrp1P56183 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Rrp1P56183 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
Rrp1P56183 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Rrp1P56183 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Rrp1P56183 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Rrp1P56183 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Rrp1P56183 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Rrp1P56183 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Rrp1P56183 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Rrp1P56183 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Rrp1P56183 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Rrp1P56183 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Rrp1P56183 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Rrp1P56183 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Rrp1P56183 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Rrp1P56183 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
Rrp1P56183 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Rrp1P56183 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Rrp1P56183 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 Tgds-204ENSMUST00000228543 1594 ntBASIC20.63■□□□□ 0.89
Rrp1P56183 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rrp1P56183 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rrp1P56183 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC20.62■□□□□ 0.89
Rrp1P56183 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rrp1P56183 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rrp1P56183 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rrp1P56183 Gm43017-201ENSMUST00000198296 752 ntBASIC20.62■□□□□ 0.89
Rrp1P56183 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Rrp1P56183 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.62■□□□□ 0.89
Rrp1P56183 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Rrp1P56183 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rrp1P56183 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Rrp1P56183 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.61■□□□□ 0.89
Rrp1P56183 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rrp1P56183 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC20.61■□□□□ 0.89
Rrp1P56183 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Rrp1P56183 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
Rrp1P56183 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.61■□□□□ 0.89
Rrp1P56183 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rrp1P56183 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Rrp1P56183 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.61■□□□□ 0.89
Rrp1P56183 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rrp1P56183 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.61■□□□□ 0.89
Rrp1P56183 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC20.61■□□□□ 0.89
Rrp1P56183 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rrp1P56183 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Rrp1P56183 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rrp1P56183 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rrp1P56183 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.61■□□□□ 0.89
Rrp1P56183 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rrp1P56183 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rrp1P56183 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Rrp1P56183 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rrp1P56183 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Rrp1P56183 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rrp1P56183 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms