Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdh11P55288 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdh11P55288 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC16.69■□□□□ 0.26
Cdh11P55288 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Cdh11P55288 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Cdh11P55288 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdh11P55288 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdh11P55288 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Cdh11P55288 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdh11P55288 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdh11P55288 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdh11P55288 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC16.68■□□□□ 0.26
Cdh11P55288 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC16.68■□□□□ 0.26
Cdh11P55288 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC16.68■□□□□ 0.26
Cdh11P55288 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC16.68■□□□□ 0.26
Cdh11P55288 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
Cdh11P55288 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC16.68■□□□□ 0.26
Cdh11P55288 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Cdh11P55288 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Cdh11P55288 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdh11P55288 Gm42911-201ENSMUST00000199360 1630 ntBASIC16.67■□□□□ 0.26
Cdh11P55288 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdh11P55288 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC16.67■□□□□ 0.26
Cdh11P55288 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdh11P55288 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdh11P55288 Gm14281-201ENSMUST00000121700 1294 ntBASIC16.67■□□□□ 0.26
Cdh11P55288 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC16.67■□□□□ 0.26
Cdh11P55288 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdh11P55288 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdh11P55288 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdh11P55288 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdh11P55288 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Cdh11P55288 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Cdh11P55288 Gm7856-201ENSMUST00000117514 1493 ntBASIC16.67■□□□□ 0.26
Cdh11P55288 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdh11P55288 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdh11P55288 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cdh11P55288 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdh11P55288 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdh11P55288 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdh11P55288 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdh11P55288 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Cdh11P55288 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdh11P55288 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Cdh11P55288 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdh11P55288 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdh11P55288 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdh11P55288 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdh11P55288 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdh11P55288 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdh11P55288 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdh11P55288 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdh11P55288 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Cdh11P55288 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
Cdh11P55288 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdh11P55288 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC16.65■□□□□ 0.26
Cdh11P55288 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cdh11P55288 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdh11P55288 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cdh11P55288 Gm42922-201ENSMUST00000195887 2078 ntBASIC16.65■□□□□ 0.26
Cdh11P55288 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdh11P55288 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC16.64■□□□□ 0.25
Cdh11P55288 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC16.64■□□□□ 0.25
Cdh11P55288 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Cdh11P55288 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdh11P55288 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdh11P55288 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC16.63■□□□□ 0.25
Cdh11P55288 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdh11P55288 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cdh11P55288 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Cdh11P55288 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC16.63■□□□□ 0.25
Cdh11P55288 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC16.63■□□□□ 0.25
Cdh11P55288 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC16.63■□□□□ 0.25
Cdh11P55288 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
Cdh11P55288 Gm37179-201ENSMUST00000194862 823 ntBASIC16.63■□□□□ 0.25
Cdh11P55288 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms