Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.42■□□□□ 0.7
Shmt1P50431 Gm22240-201ENSMUST00000175225 82 ntBASIC19.42■□□□□ 0.7
Shmt1P50431 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shmt1P50431 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shmt1P50431 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Shmt1P50431 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shmt1P50431 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Shmt1P50431 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC19.41■□□□□ 0.7
Shmt1P50431 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.41■□□□□ 0.7
Shmt1P50431 Gm22325-201ENSMUST00000158904 308 ntBASIC19.41■□□□□ 0.7
Shmt1P50431 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Shmt1P50431 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.41■□□□□ 0.7
Shmt1P50431 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shmt1P50431 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shmt1P50431 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shmt1P50431 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shmt1P50431 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shmt1P50431 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shmt1P50431 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.41■□□□□ 0.7
Shmt1P50431 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shmt1P50431 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shmt1P50431 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shmt1P50431 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shmt1P50431 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shmt1P50431 Gm2559-201ENSMUST00000201323 363 ntBASIC19.4■□□□□ 0.7
Shmt1P50431 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Shmt1P50431 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Shmt1P50431 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shmt1P50431 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.4■□□□□ 0.7
Shmt1P50431 Dio3-201ENSMUST00000097228 1449 ntBASIC19.4■□□□□ 0.7
Shmt1P50431 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.4■□□□□ 0.7
Shmt1P50431 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Shmt1P50431 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shmt1P50431 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Shmt1P50431 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shmt1P50431 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Shmt1P50431 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Shmt1P50431 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Shmt1P50431 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shmt1P50431 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shmt1P50431 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shmt1P50431 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shmt1P50431 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shmt1P50431 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.39■□□□□ 0.69
Shmt1P50431 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Shmt1P50431 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shmt1P50431 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Shmt1P50431 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shmt1P50431 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shmt1P50431 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shmt1P50431 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Shmt1P50431 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
Shmt1P50431 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Shmt1P50431 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Shmt1P50431 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shmt1P50431 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shmt1P50431 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shmt1P50431 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Shmt1P50431 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shmt1P50431 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shmt1P50431 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shmt1P50431 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Shmt1P50431 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.37■□□□□ 0.69
Shmt1P50431 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shmt1P50431 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shmt1P50431 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.37■□□□□ 0.69
Shmt1P50431 Gm8520-201ENSMUST00000186517 868 ntBASIC19.37■□□□□ 0.69
Shmt1P50431 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.37■□□□□ 0.69
Shmt1P50431 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shmt1P50431 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Shmt1P50431 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shmt1P50431 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shmt1P50431 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shmt1P50431 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Shmt1P50431 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shmt1P50431 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.36■□□□□ 0.69
Shmt1P50431 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shmt1P50431 Gm2399-201ENSMUST00000104944 225 ntBASIC19.36■□□□□ 0.69
Shmt1P50431 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Shmt1P50431 Trmt13-210ENSMUST00000198454 880 ntBASIC19.36■□□□□ 0.69
Shmt1P50431 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Shmt1P50431 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shmt1P50431 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shmt1P50431 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shmt1P50431 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Shmt1P50431 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.36■□□□□ 0.69
Shmt1P50431 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.36■□□□□ 0.69
Shmt1P50431 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shmt1P50431 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Shmt1P50431 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC19.35■□□□□ 0.69
Shmt1P50431 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Shmt1P50431 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.35■□□□□ 0.69
Shmt1P50431 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Shmt1P50431 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Shmt1P50431 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.35■□□□□ 0.69
Shmt1P50431 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Shmt1P50431 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shmt1P50431 Gm11249-201ENSMUST00000117071 859 ntBASIC19.34■□□□□ 0.69
Shmt1P50431 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.34■□□□□ 0.69
Shmt1P50431 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms