Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.26■□□□□ 0.35
Lire1P11260 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.25■□□□□ 0.35
Lire1P11260 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lire1P11260 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Lire1P11260 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lire1P11260 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lire1P11260 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Lire1P11260 Gm45412-201ENSMUST00000210217 2275 ntBASIC17.25■□□□□ 0.35
Lire1P11260 Gm13234-201ENSMUST00000120010 747 ntBASIC17.25■□□□□ 0.35
Lire1P11260 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Lire1P11260 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC17.25■□□□□ 0.35
Lire1P11260 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lire1P11260 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lire1P11260 Gm37812-201ENSMUST00000195216 2475 ntBASIC17.25■□□□□ 0.35
Lire1P11260 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
Lire1P11260 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Lire1P11260 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Lire1P11260 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lire1P11260 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lire1P11260 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
Lire1P11260 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Lire1P11260 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Lire1P11260 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lire1P11260 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lire1P11260 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Lire1P11260 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.24■□□□□ 0.35
Lire1P11260 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC17.24■□□□□ 0.35
Lire1P11260 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC17.24■□□□□ 0.35
Lire1P11260 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.24■□□□□ 0.35
Lire1P11260 Gm9988-201ENSMUST00000069786 435 ntBASIC17.24■□□□□ 0.35
Lire1P11260 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lire1P11260 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lire1P11260 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lire1P11260 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lire1P11260 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lire1P11260 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lire1P11260 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Lire1P11260 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lire1P11260 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lire1P11260 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lire1P11260 Gm12669-201ENSMUST00000122162 1009 ntBASIC17.23■□□□□ 0.35
Lire1P11260 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Lire1P11260 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Lire1P11260 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lire1P11260 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lire1P11260 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lire1P11260 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lire1P11260 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lire1P11260 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Lire1P11260 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lire1P11260 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Lire1P11260 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Lire1P11260 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Lire1P11260 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Lire1P11260 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lire1P11260 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lire1P11260 Gm27801-201ENSMUST00000184174 223 ntBASIC17.22■□□□□ 0.35
Lire1P11260 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.22■□□□□ 0.35
Lire1P11260 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC17.22■□□□□ 0.35
Lire1P11260 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lire1P11260 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lire1P11260 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Lire1P11260 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lire1P11260 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lire1P11260 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lire1P11260 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Lire1P11260 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Lire1P11260 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lire1P11260 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lire1P11260 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lire1P11260 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lire1P11260 Gm6802-201ENSMUST00000167843 1983 ntBASIC17.21■□□□□ 0.35
Lire1P11260 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lire1P11260 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lire1P11260 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.21■□□□□ 0.35
Lire1P11260 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Lire1P11260 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC17.21■□□□□ 0.35
Lire1P11260 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lire1P11260 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lire1P11260 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lire1P11260 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Lire1P11260 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Lire1P11260 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
Lire1P11260 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Lire1P11260 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Lire1P11260 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lire1P11260 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Lire1P11260 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Lire1P11260 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lire1P11260 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms