Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC20.49■□□□□ 0.87
Pcdha4O88689 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Pcdha4O88689 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdha4O88689 Gm2399-201ENSMUST00000104944 225 ntBASIC20.49■□□□□ 0.87
Pcdha4O88689 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdha4O88689 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC20.49■□□□□ 0.87
Pcdha4O88689 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdha4O88689 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC20.49■□□□□ 0.87
Pcdha4O88689 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.49■□□□□ 0.87
Pcdha4O88689 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC20.49■□□□□ 0.87
Pcdha4O88689 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.49■□□□□ 0.87
Pcdha4O88689 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.49■□□□□ 0.87
Pcdha4O88689 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdha4O88689 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pcdha4O88689 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.48■□□□□ 0.87
Pcdha4O88689 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.48■□□□□ 0.87
Pcdha4O88689 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Gm20049-201ENSMUST00000219950 730 ntBASIC20.48■□□□□ 0.87
Pcdha4O88689 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC20.48■□□□□ 0.87
Pcdha4O88689 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pcdha4O88689 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pcdha4O88689 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pcdha4O88689 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC20.47■□□□□ 0.87
Pcdha4O88689 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.47■□□□□ 0.87
Pcdha4O88689 Gm2559-201ENSMUST00000201323 363 ntBASIC20.47■□□□□ 0.87
Pcdha4O88689 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Pcdha4O88689 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pcdha4O88689 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.47■□□□□ 0.87
Pcdha4O88689 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pcdha4O88689 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pcdha4O88689 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pcdha4O88689 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Pcdha4O88689 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC20.46■□□□□ 0.87
Pcdha4O88689 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pcdha4O88689 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pcdha4O88689 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pcdha4O88689 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Pcdha4O88689 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Pcdha4O88689 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Pcdha4O88689 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Pcdha4O88689 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Pcdha4O88689 Gm12527-201ENSMUST00000117967 564 ntBASIC20.45■□□□□ 0.86
Pcdha4O88689 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC20.45■□□□□ 0.86
Pcdha4O88689 Gm12669-201ENSMUST00000122162 1009 ntBASIC20.45■□□□□ 0.86
Pcdha4O88689 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Pcdha4O88689 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.45■□□□□ 0.86
Pcdha4O88689 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC20.45■□□□□ 0.86
Pcdha4O88689 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Pcdha4O88689 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Pcdha4O88689 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Pcdha4O88689 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC20.45■□□□□ 0.86
Pcdha4O88689 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Pcdha4O88689 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Pcdha4O88689 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Pcdha4O88689 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdha4O88689 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdha4O88689 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdha4O88689 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdha4O88689 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdha4O88689 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdha4O88689 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdha4O88689 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdha4O88689 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Pcdha4O88689 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdha4O88689 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdha4O88689 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pcdha4O88689 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Pcdha4O88689 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pcdha4O88689 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pcdha4O88689 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Pcdha4O88689 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pcdha4O88689 Gm12896-201ENSMUST00000118430 226 ntBASIC20.43■□□□□ 0.86
Pcdha4O88689 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
Pcdha4O88689 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC20.43■□□□□ 0.86
Pcdha4O88689 Wnt10b-205ENSMUST00000226846 1204 ntBASIC20.43■□□□□ 0.86
Pcdha4O88689 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pcdha4O88689 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pcdha4O88689 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.43■□□□□ 0.86
Pcdha4O88689 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.43■□□□□ 0.86
Pcdha4O88689 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.43■□□□□ 0.86
Pcdha4O88689 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pcdha4O88689 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pcdha4O88689 Dio3-201ENSMUST00000097228 1449 ntBASIC20.43■□□□□ 0.86
Pcdha4O88689 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pcdha4O88689 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pcdha4O88689 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pcdha4O88689 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pcdha4O88689 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Pcdha4O88689 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms