Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm15853-202ENSMUST00000195518 2041 ntBASIC16.68■□□□□ 0.26
Col5a1O88207 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.68■□□□□ 0.26
Col5a1O88207 Gm18101-201ENSMUST00000215769 548 ntBASIC16.68■□□□□ 0.26
Col5a1O88207 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col5a1O88207 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC16.68■□□□□ 0.26
Col5a1O88207 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Col5a1O88207 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col5a1O88207 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col5a1O88207 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Col5a1O88207 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Col5a1O88207 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col5a1O88207 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col5a1O88207 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Col5a1O88207 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col5a1O88207 Gm17971-201ENSMUST00000190239 806 ntBASIC16.67■□□□□ 0.26
Col5a1O88207 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col5a1O88207 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col5a1O88207 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col5a1O88207 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col5a1O88207 Gm10616-201ENSMUST00000205285 2127 ntBASIC16.66■□□□□ 0.26
Col5a1O88207 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
Col5a1O88207 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col5a1O88207 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC16.66■□□□□ 0.26
Col5a1O88207 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col5a1O88207 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col5a1O88207 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col5a1O88207 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col5a1O88207 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Col5a1O88207 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col5a1O88207 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC16.66■□□□□ 0.26
Col5a1O88207 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC16.66■□□□□ 0.26
Col5a1O88207 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC16.66■□□□□ 0.26
Col5a1O88207 Gm3375-201ENSMUST00000203929 796 ntBASIC16.66■□□□□ 0.26
Col5a1O88207 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col5a1O88207 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col5a1O88207 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col5a1O88207 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col5a1O88207 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col5a1O88207 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col5a1O88207 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col5a1O88207 Ank2-226ENSMUST00000189368 339 ntBASIC16.65■□□□□ 0.26
Col5a1O88207 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Col5a1O88207 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col5a1O88207 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col5a1O88207 Gm10013-201ENSMUST00000106074 672 ntBASIC16.64■□□□□ 0.25
Col5a1O88207 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Col5a1O88207 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col5a1O88207 Gm12382-201ENSMUST00000122005 922 ntBASIC16.64■□□□□ 0.25
Col5a1O88207 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col5a1O88207 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col5a1O88207 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Col5a1O88207 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Col5a1O88207 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col5a1O88207 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Col5a1O88207 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col5a1O88207 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC16.63■□□□□ 0.25
Col5a1O88207 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.63■□□□□ 0.25
Col5a1O88207 Gm18025-201ENSMUST00000221733 862 ntBASIC16.63■□□□□ 0.25
Col5a1O88207 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col5a1O88207 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col5a1O88207 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col5a1O88207 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col5a1O88207 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC16.63■□□□□ 0.25
Col5a1O88207 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col5a1O88207 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col5a1O88207 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Col5a1O88207 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.63■□□□□ 0.25
Col5a1O88207 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col5a1O88207 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Col5a1O88207 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col5a1O88207 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col5a1O88207 Gm37805-201ENSMUST00000192612 1094 ntBASIC16.62■□□□□ 0.25
Col5a1O88207 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col5a1O88207 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col5a1O88207 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col5a1O88207 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col5a1O88207 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col5a1O88207 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col5a1O88207 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col5a1O88207 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
Col5a1O88207 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col5a1O88207 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col5a1O88207 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC16.61■□□□□ 0.25
Col5a1O88207 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col5a1O88207 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col5a1O88207 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC16.61■□□□□ 0.25
Col5a1O88207 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col5a1O88207 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col5a1O88207 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col5a1O88207 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC16.6■□□□□ 0.25
Col5a1O88207 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col5a1O88207 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col5a1O88207 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.6■□□□□ 0.25
Col5a1O88207 Gm15375-201ENSMUST00000119510 849 ntBASIC16.6■□□□□ 0.25
Col5a1O88207 AA414768-201ENSMUST00000121924 1257 ntBASIC16.6■□□□□ 0.25
Col5a1O88207 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC16.6■□□□□ 0.25
Col5a1O88207 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col5a1O88207 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col5a1O88207 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col5a1O88207 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms