Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ube4aE9Q735 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
Ube4aE9Q735 Mir6349-201ENSMUST00000184059 97 ntBASIC22.13■■□□□ 1.13
Ube4aE9Q735 AC135963.1-201ENSMUST00000211640 717 ntBASIC22.13■■□□□ 1.13
Ube4aE9Q735 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ube4aE9Q735 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ube4aE9Q735 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC22.13■■□□□ 1.13
Ube4aE9Q735 AC124581.1-201ENSMUST00000225416 1399 ntBASIC22.12■■□□□ 1.13
Ube4aE9Q735 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Gm37292-201ENSMUST00000192062 758 ntBASIC22.12■■□□□ 1.13
Ube4aE9Q735 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Gm44544-201ENSMUST00000207052 1844 ntBASIC22.12■■□□□ 1.13
Ube4aE9Q735 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ube4aE9Q735 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ube4aE9Q735 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ube4aE9Q735 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
Ube4aE9Q735 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ube4aE9Q735 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Ube4aE9Q735 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ube4aE9Q735 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
Ube4aE9Q735 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ube4aE9Q735 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ube4aE9Q735 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ube4aE9Q735 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ube4aE9Q735 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
Ube4aE9Q735 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC22.09■■□□□ 1.13
Ube4aE9Q735 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Ube4aE9Q735 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Gm20472-201ENSMUST00000174403 1240 ntBASIC22.09■■□□□ 1.13
Ube4aE9Q735 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ube4aE9Q735 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Ube4aE9Q735 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Ube4aE9Q735 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
Ube4aE9Q735 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC22.08■■□□□ 1.13
Ube4aE9Q735 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Ube4aE9Q735 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC22.08■■□□□ 1.13
Ube4aE9Q735 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Ube4aE9Q735 Gm21814-202ENSMUST00000203277 873 ntBASIC22.08■■□□□ 1.13
Ube4aE9Q735 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Ube4aE9Q735 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Ube4aE9Q735 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Ube4aE9Q735 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Ube4aE9Q735 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC22.06■■□□□ 1.12
Ube4aE9Q735 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Ube4aE9Q735 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms