Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm8126-201ENSMUST00000169587 1764 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
Col18a1P39061 4930444G20Rik-201ENSMUST00000092672 1773 ntAPPRIS P1 BASIC9.23□□□□□ -0.93
Col18a1P39061 Copg1-202ENSMUST00000113607 4140 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Col18a1P39061 Gm11639-201ENSMUST00000148007 3613 ntTSL 5 BASIC9.22□□□□□ -0.93
Col18a1P39061 Katnb1-201ENSMUST00000034239 3777 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Gm23440-201ENSMUST00000104299 130 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Cd200r3-205ENSMUST00000114613 950 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Gm8902-201ENSMUST00000174341 1096 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Gm36966-201ENSMUST00000192217 413 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Gm44312-201ENSMUST00000203536 469 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Gm5418-201ENSMUST00000206932 528 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 AC158521.1-202ENSMUST00000224352 645 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Mir298-201ENSMUST00000083476 82 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Mnd1-ps-202ENSMUST00000224435 2574 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Gm44745-201ENSMUST00000206563 2723 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Tmco3-201ENSMUST00000045229 4335 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Gm43880-201ENSMUST00000203635 2162 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Peg10-201ENSMUST00000166678 6662 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
Col18a1P39061 Calb1-201ENSMUST00000029876 4222 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Mbnl2-202ENSMUST00000167459 4534 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Gm18796-201ENSMUST00000190440 1767 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Notch2-201ENSMUST00000079812 10500 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Trim60-201ENSMUST00000048565 2670 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Pik3c3-201ENSMUST00000091978 2998 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Crispld1-201ENSMUST00000095075 4472 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Rai14-201ENSMUST00000090339 4909 ntAPPRIS P2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Adgrg1-202ENSMUST00000179619 3616 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Gm37100-201ENSMUST00000193344 1353 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Duxbl3-201ENSMUST00000100804 2336 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Drp2-203ENSMUST00000113226 3499 ntAPPRIS P1 TSL 5 BASIC9.22□□□□□ -0.93
Col18a1P39061 4930422C21Rik-201ENSMUST00000212419 2362 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Gm11415-201ENSMUST00000128214 480 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Gm25374-201ENSMUST00000158158 101 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Rps16-ps3-201ENSMUST00000179126 441 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Gm28353-201ENSMUST00000186482 570 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Gm28533-201ENSMUST00000186741 570 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Gm28883-201ENSMUST00000189256 369 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Gm2453-201ENSMUST00000193383 357 ntTSL 5 BASIC9.22□□□□□ -0.93
Col18a1P39061 Gm39465-202ENSMUST00000215177 470 ntTSL 5 BASIC9.22□□□□□ -0.93
Col18a1P39061 Gm3942-201ENSMUST00000218495 666 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Il9-201ENSMUST00000022019 536 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 CT025552.1-201ENSMUST00000224561 521 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 AC154595.2-201ENSMUST00000225067 310 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 AC154634.2-201ENSMUST00000225983 1184 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 1700011L22Rik-201ENSMUST00000034109 964 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Defb15-201ENSMUST00000062586 345 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Bglap3-202ENSMUST00000107542 2051 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 Gm37170-201ENSMUST00000194488 1934 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 2600014E21Rik-201ENSMUST00000186411 4805 ntTSL 5 BASIC9.22□□□□□ -0.93
Col18a1P39061 Inpp5f-203ENSMUST00000118605 3220 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Col18a1P39061 AC155298.3-201ENSMUST00000225307 3220 ntBASIC9.22□□□□□ -0.93
Col18a1P39061 Gng12-201ENSMUST00000043148 4248 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Col18a1P39061 AC105958.1-201ENSMUST00000214783 2144 ntBASIC9.21□□□□□ -0.93
Col18a1P39061 Slc25a53-203ENSMUST00000113070 3140 ntTSL 5 BASIC9.21□□□□□ -0.93
Col18a1P39061 Gm42827-201ENSMUST00000197058 1515 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
Col18a1P39061 Lipn-201ENSMUST00000025682 1502 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Col18a1P39061 Gm13301-201ENSMUST00000121728 2446 ntBASIC9.21□□□□□ -0.93
Col18a1P39061 Unc13d-202ENSMUST00000106450 4046 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.93
Col18a1P39061 5031434C07Rik-202ENSMUST00000188014 3244 ntBASIC9.21□□□□□ -0.94
Col18a1P39061 Olfr1509-206ENSMUST00000215030 2525 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.94
Col18a1P39061 Grm8-203ENSMUST00000115324 3299 ntAPPRIS P3 TSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Ighv1-20-201ENSMUST00000103506 348 ntAPPRIS ALT2 BASIC9.21□□□□□ -0.94
Col18a1P39061 Sirpb1c-205ENSMUST00000108354 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Gm13890-201ENSMUST00000117578 390 ntBASIC9.21□□□□□ -0.94
Col18a1P39061 Rpl22-ps1-201ENSMUST00000118652 386 ntBASIC9.21□□□□□ -0.94
Col18a1P39061 Mgst2-203ENSMUST00000159554 486 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Gm16164-201ENSMUST00000160078 468 ntBASIC9.21□□□□□ -0.94
Col18a1P39061 Mup7-203ENSMUST00000166098 1033 ntAPPRIS P3 TSL 5 BASIC9.21□□□□□ -0.94
Col18a1P39061 Gm28482-201ENSMUST00000189350 452 ntTSL 5 BASIC9.21□□□□□ -0.94
Col18a1P39061 Gm37203-201ENSMUST00000191618 385 ntBASIC9.21□□□□□ -0.94
Col18a1P39061 Gm9931-201ENSMUST00000193584 1185 ntBASIC9.21□□□□□ -0.94
Col18a1P39061 Ighv10-4-201ENSMUST00000193702 299 ntBASIC9.21□□□□□ -0.94
Col18a1P39061 4921511E07Rik-201ENSMUST00000194790 827 ntBASIC9.21□□□□□ -0.94
Col18a1P39061 Il6-204ENSMUST00000199765 963 ntAPPRIS ALT2 TSL 2 BASIC9.21□□□□□ -0.94
Col18a1P39061 Gm44823-201ENSMUST00000204775 1107 ntBASIC9.21□□□□□ -0.94
Col18a1P39061 Gm18103-201ENSMUST00000216621 779 ntBASIC9.21□□□□□ -0.94
Col18a1P39061 Vmn1r22-205ENSMUST00000228322 909 ntAPPRIS P1 BASIC9.21□□□□□ -0.94
Col18a1P39061 4930447F04Rik-201ENSMUST00000033525 703 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Mup4-201ENSMUST00000075973 922 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Mup13-202ENSMUST00000098042 984 ntAPPRIS P3 TSL 5 BASIC9.21□□□□□ -0.94
Col18a1P39061 Gm13986-202ENSMUST00000148587 3469 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Tardbp-206ENSMUST00000105702 6425 ntTSL 5 BASIC9.21□□□□□ -0.94
Col18a1P39061 Crispld1-202ENSMUST00000159958 3117 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Pafah2-202ENSMUST00000105870 3180 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.94
Col18a1P39061 3830406C13Rik-206ENSMUST00000223762 2292 ntAPPRIS P1 BASIC9.21□□□□□ -0.94
Col18a1P39061 Plec-215ENSMUST00000169108 14853 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Gm43086-201ENSMUST00000202536 2657 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Btbd7-206ENSMUST00000223554 8157 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Tcaf3-201ENSMUST00000069023 3110 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Col18a1P39061 Olfr1360-202ENSMUST00000205788 1988 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
Col18a1P39061 Gtdc1-201ENSMUST00000049051 2197 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Col18a1P39061 Itih3-201ENSMUST00000006697 2992 ntAPPRIS P2 TSL 5 BASIC9.2□□□□□ -0.94
Col18a1P39061 Sgsh-202ENSMUST00000100172 4223 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Col18a1P39061 Dbhos-201ENSMUST00000150024 4020 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Col18a1P39061 Msn-201ENSMUST00000117399 3842 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col18a1P39061 Prdm10-201ENSMUST00000074510 3408 ntAPPRIS P2 TSL 5 BASIC9.2□□□□□ -0.94
Col18a1P39061 Gm42608-201ENSMUST00000197563 2018 ntBASIC9.2□□□□□ -0.94
Col18a1P39061 Arhgap1-203ENSMUST00000111330 3068 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Col18a1P39061 Ptpro-207ENSMUST00000203914 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Retrieved 100 of 76,532 protein–RNA pairs in 139.7 ms