Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Obox4-ps27-201ENSMUST00000179203 1362 ntBASIC8.81□□□□□ -1
Trim47Q8C0E3 Wdfy3-205ENSMUST00000174598 10581 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Trim47Q8C0E3 Dip2b-201ENSMUST00000023768 4323 ntTSL 5 BASIC8.81□□□□□ -1
Trim47Q8C0E3 Tiam1-213ENSMUST00000163370 7255 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Trim47Q8C0E3 Pcdh11x-201ENSMUST00000050239 4442 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
Trim47Q8C0E3 Ccdc127-203ENSMUST00000160021 2682 ntTSL 1 (best) BASIC8.81□□□□□ -1
Trim47Q8C0E3 Net1-202ENSMUST00000099946 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
Trim47Q8C0E3 Meis1-209ENSMUST00000185131 3346 ntTSL 1 (best) BASIC8.81□□□□□ -1
Trim47Q8C0E3 Gm37150-201ENSMUST00000193900 2754 ntBASIC8.81□□□□□ -1
Trim47Q8C0E3 Zfp946-204ENSMUST00000167740 1572 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Trim47Q8C0E3 Runx1t1-203ENSMUST00000098257 2332 ntAPPRIS ALT1 TSL 1 (best) BASIC8.81□□□□□ -1
Trim47Q8C0E3 Nedd4l-204ENSMUST00000224347 3150 ntBASIC8.81□□□□□ -1
Trim47Q8C0E3 Cd200r4-203ENSMUST00000176819 1796 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Trim47Q8C0E3 Sestd1-201ENSMUST00000102659 2720 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Trim47Q8C0E3 Ranbp9-208ENSMUST00000222651 1951 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
Trim47Q8C0E3 Unc5c-204ENSMUST00000130636 3595 ntTSL 1 (best) BASIC8.81□□□□□ -1
Trim47Q8C0E3 9530053A07Rik-201ENSMUST00000059886 7922 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Trim47Q8C0E3 Gm44007-201ENSMUST00000203845 2189 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Zfp90-205ENSMUST00000212874 2195 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Ctnnd1-213ENSMUST00000111687 6030 ntTSL 5 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Mrps17-203ENSMUST00000119576 5061 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Wdr44-202ENSMUST00000101670 4002 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 A230001M10Rik-203ENSMUST00000198712 1747 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm43845-201ENSMUST00000202462 1820 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Card6-201ENSMUST00000118365 5995 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Kbtbd3-201ENSMUST00000049648 2231 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Clasp2-207ENSMUST00000214522 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm10388-201ENSMUST00000205001 2936 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Prss35-201ENSMUST00000036426 3444 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Nol12-203ENSMUST00000138880 3717 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Igkv8-28-201ENSMUST00000103380 305 ntAPPRIS P1 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Sult2a7-201ENSMUST00000108524 897 ntAPPRIS P2 TSL 5 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Lair1-204ENSMUST00000108600 742 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Mrps18c-202ENSMUST00000112898 460 ntTSL 3 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm7091-201ENSMUST00000116438 586 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm12365-201ENSMUST00000117931 568 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm11649-201ENSMUST00000118214 375 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm11798-201ENSMUST00000119150 421 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm15381-201ENSMUST00000121501 1156 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm371-201ENSMUST00000142240 1245 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm12860-201ENSMUST00000148457 957 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm22224-201ENSMUST00000157357 93 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm23222-201ENSMUST00000158117 76 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm22836-201ENSMUST00000158441 61 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 0610012D04Rik-201ENSMUST00000159031 531 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Lrrc51-210ENSMUST00000163903 939 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm16430-201ENSMUST00000169006 615 ntAPPRIS P1 TSL 3 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm16430-202ENSMUST00000178145 703 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm16405-202ENSMUST00000180150 703 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm20813-201ENSMUST00000186646 705 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm21617-201ENSMUST00000188297 691 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 1700011B04Rik-201ENSMUST00000189140 651 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm2077-201ENSMUST00000195017 319 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm6558-203ENSMUST00000195395 612 ntTSL 5 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm6522-201ENSMUST00000197160 1203 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm43382-201ENSMUST00000198954 838 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm20223-201ENSMUST00000199932 805 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm7879-202ENSMUST00000200338 635 ntTSL 5 BASIC8.8□□□□□ -1
Trim47Q8C0E3 4930425K10Rik-201ENSMUST00000201190 745 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Clec2f-202ENSMUST00000204981 657 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm45075-201ENSMUST00000208426 649 ntTSL 3 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm5338-201ENSMUST00000209530 639 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm45272-202ENSMUST00000209875 502 ntTSL 3 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm20948-201ENSMUST00000211091 449 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm11149-202ENSMUST00000215070 1169 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Ormdl2-202ENSMUST00000217685 666 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm6362-201ENSMUST00000217686 836 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Cd74-201ENSMUST00000050487 1218 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Vmn1r184-201ENSMUST00000057123 945 ntAPPRIS P1 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Trex1-201ENSMUST00000061973 1084 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Arl9-201ENSMUST00000071199 402 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Taar4-201ENSMUST00000092660 1044 ntAPPRIS P1 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Timp1-201ENSMUST00000009530 833 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Anapc15-ps-201ENSMUST00000099328 426 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Hsf3-201ENSMUST00000059003 1479 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm8798-202ENSMUST00000213048 2357 ntTSL 5 BASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm5386-201ENSMUST00000121749 2450 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Gm26888-201ENSMUST00000181119 3683 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 AC132474.1-201ENSMUST00000214407 3686 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Smarca1-203ENSMUST00000101616 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 A330015K06Rik-201ENSMUST00000195489 4286 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Skp2-202ENSMUST00000110585 6185 ntTSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Exoc3-201ENSMUST00000035934 4922 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Ccdc14-201ENSMUST00000023532 4107 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 Zfp474-202ENSMUST00000209270 2113 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Trim47Q8C0E3 AC153143.1-201ENSMUST00000222966 1340 ntBASIC8.8□□□□□ -1
Trim47Q8C0E3 Pcdh15-236ENSMUST00000193174 5936 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
Trim47Q8C0E3 Eapp-206ENSMUST00000163433 2658 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Trim47Q8C0E3 Adgrl2-214ENSMUST00000199238 4670 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
Trim47Q8C0E3 4930447C04Rik-208ENSMUST00000136075 1970 ntTSL 1 (best) BASIC8.79□□□□□ -1
Trim47Q8C0E3 Adgrb3-205ENSMUST00000135518 5432 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
Trim47Q8C0E3 Fto-202ENSMUST00000125471 3887 ntTSL 1 (best) BASIC8.79□□□□□ -1
Trim47Q8C0E3 C1qtnf7-201ENSMUST00000076939 3879 ntTSL 1 (best) BASIC8.79□□□□□ -1
Trim47Q8C0E3 Crb1-202ENSMUST00000196402 2711 ntTSL 1 (best) BASIC8.79□□□□□ -1
Trim47Q8C0E3 Gm6640-201ENSMUST00000120629 1587 ntBASIC8.79□□□□□ -1
Trim47Q8C0E3 Abr-201ENSMUST00000065028 4444 ntTSL 1 (best) BASIC8.79□□□□□ -1
Trim47Q8C0E3 Kbtbd3-202ENSMUST00000212221 2313 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Trim47Q8C0E3 Zfp280d-217ENSMUST00000184517 3919 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
Trim47Q8C0E3 Gm9732-201ENSMUST00000111874 492 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
Trim47Q8C0E3 Smpx-203ENSMUST00000112521 898 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms