Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 4930521O17Rik-201ENSMUST00000219339 491 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Usp40Q8BWR4 CT009742.1-201ENSMUST00000222507 702 ntBASIC9.77□□□□□ -0.85
Usp40Q8BWR4 AC160114.2-201ENSMUST00000223021 300 ntBASIC9.77□□□□□ -0.85
Usp40Q8BWR4 AC124489.3-201ENSMUST00000224037 278 ntBASIC9.77□□□□□ -0.85
Usp40Q8BWR4 Olfr1306-201ENSMUST00000099607 939 ntAPPRIS P1 BASIC9.77□□□□□ -0.85
Usp40Q8BWR4 Slfn9-201ENSMUST00000038211 5769 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Usp40Q8BWR4 Nup93-207ENSMUST00000212824 2928 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Usp40Q8BWR4 Slc6a18-203ENSMUST00000109680 4052 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Usp40Q8BWR4 Papss2-201ENSMUST00000025833 3635 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Usp40Q8BWR4 Dnajc6-201ENSMUST00000038207 5258 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Usp40Q8BWR4 Gm11733-201ENSMUST00000092394 2311 ntAPPRIS P1 TSL 2 BASIC9.77□□□□□ -0.85
Usp40Q8BWR4 Cast-202ENSMUST00000220738 1653 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Usp40Q8BWR4 Onecut2-201ENSMUST00000115145 13389 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Usp40Q8BWR4 Onecut2-202ENSMUST00000175965 13391 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Usp40Q8BWR4 Gm14976-201ENSMUST00000117055 1394 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Csrnp3-201ENSMUST00000053910 4495 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Pdlim5-203ENSMUST00000090134 1722 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Evi2a-205ENSMUST00000170799 2289 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Hormad1-203ENSMUST00000107154 1444 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gm37552-201ENSMUST00000193939 2520 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 March1-201ENSMUST00000039540 2733 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Igkv3-5-201ENSMUST00000103400 382 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Cst8-202ENSMUST00000109947 804 ntAPPRIS P1 TSL 3 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Lage3-202ENSMUST00000114152 746 ntTSL 2 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Cd209d-201ENSMUST00000011445 919 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gm14612-201ENSMUST00000121522 881 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gm4886-201ENSMUST00000121874 1176 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gm15242-201ENSMUST00000122459 283 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gm7613-201ENSMUST00000139070 487 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 4931413K12Rik-201ENSMUST00000142068 1282 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 1700027A07Rik-201ENSMUST00000150472 458 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Mpped2-201ENSMUST00000016530 1217 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Mir5617-201ENSMUST00000176786 57 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Sbp-206ENSMUST00000183155 882 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gm29099-201ENSMUST00000187370 760 ntTSL 5 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Ighv10-4-201ENSMUST00000193702 299 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gm40348-201ENSMUST00000199648 452 ntTSL 3 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 AC124395.1-201ENSMUST00000225940 707 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 AC123917.1-201ENSMUST00000228063 1048 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Cxcl13-201ENSMUST00000023840 1150 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 4930522N08Rik-201ENSMUST00000031274 916 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Olfr1385-201ENSMUST00000071807 930 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 mt-Nd3-201ENSMUST00000082411 348 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gm22865-201ENSMUST00000083949 214 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gm18248-201ENSMUST00000191164 1846 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gja5-201ENSMUST00000072600 3109 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Vmn1r44-213ENSMUST00000228700 2004 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Armc8-203ENSMUST00000186049 2761 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gm37403-201ENSMUST00000193775 3521 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Akr1c20-202ENSMUST00000080361 1337 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 AC117608.1-201ENSMUST00000225500 3418 ntBASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Ppp4r4-202ENSMUST00000187155 2675 ntAPPRIS ALT2 TSL 5 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Avpr1b-201ENSMUST00000027690 4023 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Mmp10-201ENSMUST00000034488 1722 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Olfr666-202ENSMUST00000214757 1949 ntAPPRIS P1 TSL 5 BASIC9.76□□□□□ -0.85
Usp40Q8BWR4 Gm33968-201ENSMUST00000211015 1562 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Lgi1-204ENSMUST00000196090 1789 ntTSL 5 BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Gm10439-201ENSMUST00000101181 1977 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Cdon-201ENSMUST00000042842 7213 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Gm43679-201ENSMUST00000197051 3677 ntBASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Gm12532-201ENSMUST00000148448 2684 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Gjc3-201ENSMUST00000077119 4002 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Apc-ps1-201ENSMUST00000119356 470 ntBASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Gm15349-201ENSMUST00000121154 204 ntBASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Hmgb4os-201ENSMUST00000131581 518 ntTSL 5 BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 A330102I10Rik-203ENSMUST00000145801 737 ntTSL 5 BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Gm7019-201ENSMUST00000194122 369 ntBASIC9.75□□□□□ -0.85
Usp40Q8BWR4 4930566N20Rik-201ENSMUST00000195173 1199 ntBASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Gm20239-201ENSMUST00000196610 982 ntBASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Mrln-201ENSMUST00000020090 443 ntAPPRIS P1 TSL 2 BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Zfp78-203ENSMUST00000207314 4675 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 AC102312.1-203ENSMUST00000219530 763 ntTSL 2 BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 CT009728.1-201ENSMUST00000225228 1050 ntBASIC9.75□□□□□ -0.85
Usp40Q8BWR4 AC164436.1-201ENSMUST00000227074 772 ntBASIC9.75□□□□□ -0.85
Usp40Q8BWR4 n-R5s217-201ENSMUST00000083341 116 ntBASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Gm14085-201ENSMUST00000110521 3740 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Muc4-201ENSMUST00000096106 11277 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Trps1-206ENSMUST00000184458 5293 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 5031434C07Rik-202ENSMUST00000188014 3244 ntBASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Gm29017-201ENSMUST00000190598 2092 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
Usp40Q8BWR4 Gm43339-201ENSMUST00000200032 1606 ntBASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Igf1os-202ENSMUST00000146581 2595 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Slc41a2-201ENSMUST00000039956 4742 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm11541-201ENSMUST00000069852 1681 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Fgfbp1-202ENSMUST00000199481 2191 ntAPPRIS P1 BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Ccdc80-202ENSMUST00000099498 3671 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm44745-201ENSMUST00000206563 2723 ntBASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Brca1-201ENSMUST00000017290 6572 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 2610524H06Rik-201ENSMUST00000100850 947 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Ighv1-18-201ENSMUST00000103504 306 ntAPPRIS ALT2 BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Smim26-201ENSMUST00000136628 471 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 1110038B12Rik-201ENSMUST00000172501 579 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm24155-201ENSMUST00000175259 110 ntBASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm5871-201ENSMUST00000176461 718 ntBASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm27186-201ENSMUST00000184223 307 ntBASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Trav1-202ENSMUST00000185651 329 ntAPPRIS ALT2 BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 1700020G17Rik-203ENSMUST00000191286 723 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm42516-201ENSMUST00000198691 767 ntBASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm4751-201ENSMUST00000200620 1105 ntBASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm43772-201ENSMUST00000202052 379 ntBASIC9.74□□□□□ -0.85
Retrieved 100 of 76,532 protein–RNA pairs in 60.6 ms