Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 AC163684.1-201ENSMUST00000223766 927 ntBASIC10.81□□□□□ -0.68
Cux1P53564 AC156559.2-201ENSMUST00000224403 384 ntBASIC10.81□□□□□ -0.68
Cux1P53564 CT009713.1-201ENSMUST00000224828 853 ntBASIC10.81□□□□□ -0.68
Cux1P53564 Atp6v0a1-202ENSMUST00000092663 3813 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cux1P53564 Il1rl1-202ENSMUST00000097772 5302 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cux1P53564 Mmp10-201ENSMUST00000034488 1722 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cux1P53564 Zfp947-201ENSMUST00000080249 2872 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cux1P53564 Xrcc4-201ENSMUST00000022115 1540 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cux1P53564 Nt5c2-201ENSMUST00000086961 3745 ntTSL 5 BASIC10.81□□□□□ -0.68
Cux1P53564 Zfp943-201ENSMUST00000055349 2741 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Aloxe3-201ENSMUST00000021268 3019 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 4930444G20Rik-201ENSMUST00000092672 1773 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Cux1P53564 Itgae-202ENSMUST00000102537 3825 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Insl5-202ENSMUST00000106869 438 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Il4-203ENSMUST00000140684 530 ntTSL 2 BASIC10.8□□□□□ -0.68
Cux1P53564 A330102I10Rik-203ENSMUST00000145801 737 ntTSL 5 BASIC10.8□□□□□ -0.68
Cux1P53564 Gm17217-201ENSMUST00000166613 469 ntBASIC10.8□□□□□ -0.68
Cux1P53564 Gm20617-202ENSMUST00000177332 758 ntTSL 3 BASIC10.8□□□□□ -0.68
Cux1P53564 Gm27602-201ENSMUST00000183861 111 ntBASIC10.8□□□□□ -0.68
Cux1P53564 Gm37901-201ENSMUST00000195107 514 ntBASIC10.8□□□□□ -0.68
Cux1P53564 Gm43612-201ENSMUST00000196087 3207 ntBASIC10.8□□□□□ -0.68
Cux1P53564 Gm42711-201ENSMUST00000197060 2302 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 U90926-202ENSMUST00000201332 524 ntAPPRIS P5 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Olfr396-ps1-202ENSMUST00000205791 633 ntBASIC10.8□□□□□ -0.68
Cux1P53564 Klk1b12-ps-201ENSMUST00000206650 751 ntBASIC10.8□□□□□ -0.68
Cux1P53564 Gm4513-201ENSMUST00000207881 1438 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Gm4565-201ENSMUST00000208134 1438 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Gm45486-201ENSMUST00000211767 1109 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 AC155941.3-201ENSMUST00000218476 308 ntBASIC10.8□□□□□ -0.68
Cux1P53564 AC152394.1-201ENSMUST00000227360 1086 ntBASIC10.8□□□□□ -0.68
Cux1P53564 AC132833.4-201ENSMUST00000228313 203 ntBASIC10.8□□□□□ -0.68
Cux1P53564 Klrb1a-201ENSMUST00000032512 1274 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Olfr1502-201ENSMUST00000074221 951 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Cux1P53564 BC061195-201ENSMUST00000088133 577 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 1700003E24Rik-201ENSMUST00000088134 577 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Il4-201ENSMUST00000000889 590 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Olfr1085-201ENSMUST00000099879 942 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Cux1P53564 Stambpl1-202ENSMUST00000119603 1664 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Cts7-201ENSMUST00000021892 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Nup93-202ENSMUST00000109547 2847 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Cux1P53564 Hipk3-203ENSMUST00000111125 3651 ntTSL 5 BASIC10.8□□□□□ -0.68
Cux1P53564 AC140409.2-201ENSMUST00000216936 3079 ntTSL 5 BASIC10.8□□□□□ -0.68
Cux1P53564 Olfr686-202ENSMUST00000214147 2646 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Cux1P53564 Pik3cg-202ENSMUST00000085469 4584 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Alms1-201ENSMUST00000072018 9986 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Crispld1-202ENSMUST00000159958 3117 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Gm20560-201ENSMUST00000204577 3513 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Ankrd49-206ENSMUST00000216372 2679 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cux1P53564 Selenof-202ENSMUST00000106211 1178 ntTSL 3 BASIC10.79□□□□□ -0.68
Cux1P53564 Gm11920-201ENSMUST00000118491 563 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Gm15618-201ENSMUST00000121610 452 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Gm5125-201ENSMUST00000148614 624 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Gm24435-201ENSMUST00000157886 110 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Ulbp1-201ENSMUST00000169796 1093 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Mir124-2hg-201ENSMUST00000185804 3844 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Ms4a5-202ENSMUST00000186937 816 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Gm44911-201ENSMUST00000208436 1062 ntBASIC10.79□□□□□ -0.68
Cux1P53564 BC024386-204ENSMUST00000209842 688 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 CT009738.1-201ENSMUST00000219031 809 ntBASIC10.79□□□□□ -0.68
Cux1P53564 CT009711.4-201ENSMUST00000225685 198 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Tceal8-201ENSMUST00000060101 1250 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Ms4a5-201ENSMUST00000067673 1005 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Gm8822-201ENSMUST00000118948 2347 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Gm15907-201ENSMUST00000134284 2309 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 4930579H20Rik-201ENSMUST00000187815 1516 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 AC111010.1-203ENSMUST00000227287 1548 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Vps8-206ENSMUST00000118923 4838 ntTSL 5 BASIC10.79□□□□□ -0.68
Cux1P53564 Nolc1-201ENSMUST00000165017 3634 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 9930111J21Rik2-201ENSMUST00000093152 2403 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 9930111J21Rik1-201ENSMUST00000093153 2403 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Tgm3-201ENSMUST00000110299 4135 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Ebpl-201ENSMUST00000022494 10092 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Ppp3r2-201ENSMUST00000029991 3026 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Spin4-201ENSMUST00000096367 4173 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Cux1P53564 St18-212ENSMUST00000151281 3533 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Mtmr4-203ENSMUST00000119628 4664 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Cyp2j13-201ENSMUST00000030305 4374 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 4632411P08Rik-201ENSMUST00000181005 3237 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Gm6117-201ENSMUST00000150540 1333 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Nostrin-201ENSMUST00000041865 1808 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 C230057A21Rik-201ENSMUST00000194944 3331 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Col12a1-202ENSMUST00000121227 9953 ntTSL 5 BASIC10.79□□□□□ -0.68
Cux1P53564 Gm44021-201ENSMUST00000203055 3516 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Tex11-201ENSMUST00000009814 3250 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Clca4a-201ENSMUST00000029923 3004 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Slc6a18-202ENSMUST00000109679 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cux1P53564 Mptx2-201ENSMUST00000111224 794 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Cux1P53564 Gm8250-201ENSMUST00000117398 774 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Gm3810-201ENSMUST00000122413 476 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Gm15845-201ENSMUST00000130244 996 ntTSL 2 BASIC10.79□□□□□ -0.68
Cux1P53564 Gm23386-201ENSMUST00000158585 144 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Gm10177-201ENSMUST00000160052 444 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Gm5930-202ENSMUST00000178002 489 ntTSL 5 BASIC10.79□□□□□ -0.68
Cux1P53564 Gm42707-202ENSMUST00000196668 618 ntTSL 3 BASIC10.79□□□□□ -0.68
Cux1P53564 Gm43212-201ENSMUST00000198208 394 ntBASIC10.79□□□□□ -0.68
Cux1P53564 Ttc26-205ENSMUST00000162554 4195 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cux1P53564 Nyap2-202ENSMUST00000113494 4540 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cux1P53564 Pcyt1b-202ENSMUST00000113933 4867 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cux1P53564 Pcyt1b-201ENSMUST00000045898 4888 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cux1P53564 Fnbp1-207ENSMUST00000113559 4378 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms