Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm22426-201ENSMUST00000103811 96 ntBASIC9.36□□□□□ -0.91
Col18a1P39061 Gm26422-201ENSMUST00000104276 132 ntBASIC9.36□□□□□ -0.91
Col18a1P39061 Gm12901-201ENSMUST00000118690 532 ntBASIC9.36□□□□□ -0.91
Col18a1P39061 Vmn1r5-201ENSMUST00000164307 1056 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Col18a1P39061 1700023F02Rik-202ENSMUST00000188279 412 ntTSL 2 BASIC9.36□□□□□ -0.91
Col18a1P39061 Gm19211-201ENSMUST00000200251 1206 ntBASIC9.36□□□□□ -0.91
Col18a1P39061 Asb17os-202ENSMUST00000200329 497 ntTSL 3 BASIC9.36□□□□□ -0.91
Col18a1P39061 Gm5886-201ENSMUST00000203420 641 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Col18a1P39061 Gm5886-202ENSMUST00000203957 522 ntBASIC9.36□□□□□ -0.91
Col18a1P39061 Gm45359-201ENSMUST00000210635 427 ntBASIC9.36□□□□□ -0.91
Col18a1P39061 AC154718.1-201ENSMUST00000226676 250 ntBASIC9.36□□□□□ -0.91
Col18a1P39061 AC132833.4-201ENSMUST00000228313 203 ntBASIC9.36□□□□□ -0.91
Col18a1P39061 Vmn1r231-201ENSMUST00000061278 936 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Col18a1P39061 Gm20302-201ENSMUST00000080671 275 ntBASIC9.36□□□□□ -0.91
Col18a1P39061 Snora44-201ENSMUST00000082670 129 ntBASIC9.36□□□□□ -0.91
Col18a1P39061 Gm5169-201ENSMUST00000096469 768 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Col18a1P39061 Prl2c3-201ENSMUST00000099805 857 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Col18a1P39061 Rab3gap2-201ENSMUST00000069652 7052 ntAPPRIS P2 TSL 5 BASIC9.36□□□□□ -0.91
Col18a1P39061 Zfp24-201ENSMUST00000066497 5732 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Col18a1P39061 Gimap4-201ENSMUST00000067506 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Col18a1P39061 Gigyf2-217ENSMUST00000174501 3876 ntAPPRIS P3 TSL 5 BASIC9.36□□□□□ -0.91
Col18a1P39061 Bpifc-201ENSMUST00000061699 2714 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Col18a1P39061 Mep1a-202ENSMUST00000117137 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Col18a1P39061 4933411E08Rik-201ENSMUST00000217950 1689 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Col18a1P39061 Iqch-206ENSMUST00000171243 3099 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
Col18a1P39061 Clasp1-205ENSMUST00000185405 4597 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Col18a1P39061 Plxdc2-201ENSMUST00000028081 6947 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Lats1-203ENSMUST00000217931 4186 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Lats1-201ENSMUST00000040043 4155 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Col18a1P39061 Washc2-201ENSMUST00000036759 4307 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Ikbkap-201ENSMUST00000030140 6160 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Tbc1d24-207ENSMUST00000171189 4592 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Ank1-206ENSMUST00000117662 6257 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Esp36-201ENSMUST00000172814 1117 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Esp36-202ENSMUST00000177882 1117 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Gm7745-201ENSMUST00000182235 973 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Gm3428-202ENSMUST00000184555 416 ntTSL 5 BASIC9.35□□□□□ -0.91
Col18a1P39061 Frmd8os-202ENSMUST00000187697 516 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Gm28620-201ENSMUST00000190463 439 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Gm6649-201ENSMUST00000199743 1165 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Gm45026-201ENSMUST00000205292 833 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Stx3-206ENSMUST00000211047 870 ntTSL 5 BASIC9.35□□□□□ -0.91
Col18a1P39061 Mrpl42-203ENSMUST00000218893 661 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 AC079681.1-201ENSMUST00000219437 639 ntTSL 3 BASIC9.35□□□□□ -0.91
Col18a1P39061 Gm17849-201ENSMUST00000219788 853 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Gm272-201ENSMUST00000222073 919 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 CT030645.2-201ENSMUST00000224321 1012 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Olfr448-201ENSMUST00000058668 933 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Col18a1P39061 Olfr516-201ENSMUST00000071410 945 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Col18a1P39061 Mir196a-1-201ENSMUST00000083612 102 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Sec16b-202ENSMUST00000086130 4661 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Gm44165-201ENSMUST00000203093 1469 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 4930480E11Rik-201ENSMUST00000035626 1486 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Col18a1P39061 D030047H15Rik-201ENSMUST00000148318 2536 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Col18a1P39061 Cast-207ENSMUST00000222588 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Unc45b-202ENSMUST00000108160 4152 ntAPPRIS ALT1 TSL 5 BASIC9.35□□□□□ -0.91
Col18a1P39061 Nlgn1-203ENSMUST00000191835 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Ppp3r2-201ENSMUST00000029991 3026 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Nup210l-202ENSMUST00000200410 5710 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Col18a1P39061 Cat-201ENSMUST00000028610 2613 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 AC122828.2-201ENSMUST00000222511 2880 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 9230009I02Rik-201ENSMUST00000101255 1148 ntTSL 2 BASIC9.35□□□□□ -0.91
Col18a1P39061 Gm23910-201ENSMUST00000104597 132 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Foxp2-202ENSMUST00000115469 1293 ntTSL 5 BASIC9.35□□□□□ -0.91
Col18a1P39061 Gm649-201ENSMUST00000117284 1054 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Gm28377-201ENSMUST00000189695 720 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Gm37705-201ENSMUST00000195111 577 ntTSL 5 BASIC9.35□□□□□ -0.91
Col18a1P39061 Gm35216-201ENSMUST00000203777 433 ntTSL 2 BASIC9.35□□□□□ -0.91
Col18a1P39061 Gm44239-201ENSMUST00000204228 271 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Gm18467-201ENSMUST00000208805 434 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Gm4510-201ENSMUST00000218265 427 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 AC132433.1-201ENSMUST00000221553 1101 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 AC123656.1-201ENSMUST00000227121 581 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Lalba-201ENSMUST00000023726 771 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Col18a1P39061 Gm26163-201ENSMUST00000083792 178 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 n-R5s58-201ENSMUST00000093682 119 ntBASIC9.35□□□□□ -0.91
Col18a1P39061 Lepr-201ENSMUST00000037552 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col18a1P39061 Pcsk2os1-201ENSMUST00000126735 4233 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col18a1P39061 Mcf2-202ENSMUST00000063507 4227 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col18a1P39061 Ppp1r3b-202ENSMUST00000210337 4349 ntAPPRIS P1 TSL 2 BASIC9.34□□□□□ -0.91
Col18a1P39061 Olfr97-206ENSMUST00000216225 1847 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Col18a1P39061 Chrm1-202ENSMUST00000163785 6271 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col18a1P39061 Galnt11-203ENSMUST00000114952 2449 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col18a1P39061 B3gnt2-201ENSMUST00000055549 2602 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col18a1P39061 Ppp4r4-202ENSMUST00000187155 2675 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Col18a1P39061 CT571245.1-201ENSMUST00000218642 3465 ntBASIC9.34□□□□□ -0.91
Col18a1P39061 Gm38299-201ENSMUST00000193214 3789 ntBASIC9.34□□□□□ -0.91
Col18a1P39061 Synj2-206ENSMUST00000115787 4013 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col18a1P39061 Cttnbp2-201ENSMUST00000090601 5183 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col18a1P39061 Olfr332-201ENSMUST00000180165 3426 ntAPPRIS P1 TSL 2 BASIC9.34□□□□□ -0.91
Col18a1P39061 Dsc3-203ENSMUST00000225110 3123 ntAPPRIS P2 BASIC9.34□□□□□ -0.91
Col18a1P39061 Klf10-202ENSMUST00000226363 2917 ntBASIC9.34□□□□□ -0.91
Col18a1P39061 Gm36011-201ENSMUST00000208671 2719 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col18a1P39061 Vmn2r16-201ENSMUST00000165180 2553 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Col18a1P39061 Olfr1357-201ENSMUST00000095473 1826 ntAPPRIS P1 TSL 2 BASIC9.34□□□□□ -0.91
Col18a1P39061 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col18a1P39061 Pnliprp1-201ENSMUST00000048644 1619 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col18a1P39061 Phactr4-203ENSMUST00000102568 4614 ntAPPRIS P2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 102.2 ms