Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Scn11aQ9R053 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Scn11aQ9R053 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Scn11aQ9R053 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
Scn11aQ9R053 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Scn11aQ9R053 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Scn11aQ9R053 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Scn11aQ9R053 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC22.02■■□□□ 1.11
Scn11aQ9R053 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Scn11aQ9R053 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Scn11aQ9R053 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Scn11aQ9R053 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC22■■□□□ 1.11
Scn11aQ9R053 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC22■■□□□ 1.11
Scn11aQ9R053 Gm16042-201ENSMUST00000204813 1247 ntBASIC22■■□□□ 1.11
Scn11aQ9R053 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Scn11aQ9R053 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Scn11aQ9R053 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Scn11aQ9R053 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC22■■□□□ 1.11
Scn11aQ9R053 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC22■■□□□ 1.11
Scn11aQ9R053 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Scn11aQ9R053 Rncr4-201ENSMUST00000194541 2234 ntBASIC22■■□□□ 1.11
Scn11aQ9R053 Gm12382-201ENSMUST00000122005 922 ntBASIC21.99■■□□□ 1.11
Scn11aQ9R053 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Scn11aQ9R053 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Scn11aQ9R053 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Scn11aQ9R053 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Scn11aQ9R053 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Scn11aQ9R053 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Scn11aQ9R053 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Scn11aQ9R053 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Scn11aQ9R053 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Scn11aQ9R053 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
Scn11aQ9R053 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Scn11aQ9R053 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Scn11aQ9R053 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Scn11aQ9R053 Gm9194-201ENSMUST00000220749 1447 ntBASIC21.97■■□□□ 1.11
Scn11aQ9R053 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Scn11aQ9R053 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Scn11aQ9R053 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC21.97■■□□□ 1.11
Scn11aQ9R053 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Scn11aQ9R053 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Scn11aQ9R053 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Scn11aQ9R053 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
Scn11aQ9R053 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC21.97■■□□□ 1.11
Scn11aQ9R053 Gm10138-203ENSMUST00000206952 366 ntBASIC21.97■■□□□ 1.11
Scn11aQ9R053 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Gm9885-202ENSMUST00000186234 2209 ntBASIC21.96■■□□□ 1.11
Scn11aQ9R053 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Mir2861-201ENSMUST00000175539 82 ntBASIC21.96■■□□□ 1.11
Scn11aQ9R053 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Scn11aQ9R053 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Scn11aQ9R053 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Scn11aQ9R053 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
Scn11aQ9R053 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Scn11aQ9R053 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
Scn11aQ9R053 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Scn11aQ9R053 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Scn11aQ9R053 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Scn11aQ9R053 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Scn11aQ9R053 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Scn11aQ9R053 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Scn11aQ9R053 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
Scn11aQ9R053 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC21.94■■□□□ 1.1
Scn11aQ9R053 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC21.94■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms