Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC18.82■□□□□ 0.6
Vps28Q9D1C8 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps28Q9D1C8 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps28Q9D1C8 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps28Q9D1C8 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Vps28Q9D1C8 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps28Q9D1C8 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps28Q9D1C8 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Vps28Q9D1C8 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps28Q9D1C8 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Vps28Q9D1C8 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Vps28Q9D1C8 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps28Q9D1C8 Gm43672-201ENSMUST00000199072 1731 ntBASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Rab3c-203ENSMUST00000224180 967 ntBASIC18.8■□□□□ 0.6
Vps28Q9D1C8 AC122769.4-201ENSMUST00000228166 901 ntBASIC18.8■□□□□ 0.6
Vps28Q9D1C8 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps28Q9D1C8 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Gm44672-201ENSMUST00000206944 1098 ntBASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Vps28Q9D1C8 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vps28Q9D1C8 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vps28Q9D1C8 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Vps28Q9D1C8 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC18.77■□□□□ 0.6
Vps28Q9D1C8 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vps28Q9D1C8 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vps28Q9D1C8 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Vps28Q9D1C8 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vps28Q9D1C8 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Vps28Q9D1C8 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.77■□□□□ 0.6
Vps28Q9D1C8 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Vps28Q9D1C8 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Vps28Q9D1C8 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Vps28Q9D1C8 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Vps28Q9D1C8 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Vps28Q9D1C8 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vps28Q9D1C8 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms