Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Gm9194-201ENSMUST00000220749 1447 ntBASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
Ddx56Q9D0R4 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Ddx56Q9D0R4 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx56Q9D0R4 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx56Q9D0R4 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx56Q9D0R4 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx56Q9D0R4 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.31■□□□□ 0.68
Ddx56Q9D0R4 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx56Q9D0R4 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx56Q9D0R4 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.31■□□□□ 0.68
Ddx56Q9D0R4 Dmtn-210ENSMUST00000228824 2377 ntBASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.3■□□□□ 0.68
Ddx56Q9D0R4 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Ddx56Q9D0R4 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Ddx56Q9D0R4 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx56Q9D0R4 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC19.28■□□□□ 0.68
Ddx56Q9D0R4 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.28■□□□□ 0.68
Ddx56Q9D0R4 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx56Q9D0R4 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx56Q9D0R4 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx56Q9D0R4 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx56Q9D0R4 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC19.28■□□□□ 0.68
Ddx56Q9D0R4 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx56Q9D0R4 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC19.28■□□□□ 0.68
Ddx56Q9D0R4 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx56Q9D0R4 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx56Q9D0R4 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx56Q9D0R4 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC19.27■□□□□ 0.68
Ddx56Q9D0R4 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx56Q9D0R4 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx56Q9D0R4 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ddx56Q9D0R4 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ddx56Q9D0R4 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ddx56Q9D0R4 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx56Q9D0R4 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx56Q9D0R4 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx56Q9D0R4 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.25■□□□□ 0.67
Ddx56Q9D0R4 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx56Q9D0R4 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.25■□□□□ 0.67
Ddx56Q9D0R4 Gm6365-201ENSMUST00000054711 744 ntBASIC19.25■□□□□ 0.67
Ddx56Q9D0R4 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Ddx56Q9D0R4 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
Ddx56Q9D0R4 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx56Q9D0R4 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Ddx56Q9D0R4 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx56Q9D0R4 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Gm27405-201ENSMUST00000184201 112 ntBASIC19.24■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms