Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smc1aQ9CU62 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smc1aQ9CU62 BC021767-201ENSMUST00000126387 1716 ntBASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Gm13146-201ENSMUST00000118508 780 ntBASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smc1aQ9CU62 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smc1aQ9CU62 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Smc1aQ9CU62 AC122335.2-201ENSMUST00000213901 6181 ntBASIC20.44■□□□□ 0.86
Smc1aQ9CU62 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smc1aQ9CU62 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Gm7290-201ENSMUST00000104990 617 ntBASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Gm12918-201ENSMUST00000120234 636 ntBASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Gm15710-201ENSMUST00000121821 636 ntBASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Gm5075-201ENSMUST00000196916 622 ntBASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Smc1aQ9CU62 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Smc1aQ9CU62 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Smc1aQ9CU62 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC20.41■□□□□ 0.86
Smc1aQ9CU62 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Smc1aQ9CU62 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms