Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Clp1Q99LI9 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Clp1Q99LI9 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC19.5■□□□□ 0.71
Clp1Q99LI9 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Clp1Q99LI9 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC19.5■□□□□ 0.71
Clp1Q99LI9 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.5■□□□□ 0.71
Clp1Q99LI9 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC19.5■□□□□ 0.71
Clp1Q99LI9 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Clp1Q99LI9 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Clp1Q99LI9 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Mir6349-201ENSMUST00000184059 97 ntBASIC19.49■□□□□ 0.71
Clp1Q99LI9 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clp1Q99LI9 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clp1Q99LI9 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Gm6659-201ENSMUST00000174752 547 ntBASIC19.48■□□□□ 0.71
Clp1Q99LI9 Gm7889-201ENSMUST00000185591 958 ntBASIC19.48■□□□□ 0.71
Clp1Q99LI9 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clp1Q99LI9 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clp1Q99LI9 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clp1Q99LI9 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC19.47■□□□□ 0.71
Clp1Q99LI9 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Clp1Q99LI9 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC19.47■□□□□ 0.71
Clp1Q99LI9 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Clp1Q99LI9 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clp1Q99LI9 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
Clp1Q99LI9 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Clp1Q99LI9 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Clp1Q99LI9 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Gm21362-201ENSMUST00000194272 928 ntBASIC19.46■□□□□ 0.71
Clp1Q99LI9 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.46■□□□□ 0.71
Clp1Q99LI9 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clp1Q99LI9 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Gm12382-201ENSMUST00000122005 922 ntBASIC19.45■□□□□ 0.7
Clp1Q99LI9 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC19.45■□□□□ 0.7
Clp1Q99LI9 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Clp1Q99LI9 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Clp1Q99LI9 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
Clp1Q99LI9 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clp1Q99LI9 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms