Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28bQ8CEG5 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
Ccdc28bQ8CEG5 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28bQ8CEG5 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Gm12922-201ENSMUST00000120626 809 ntBASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 AC093043.1-201ENSMUST00000226700 898 ntBASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28bQ8CEG5 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Spcs1-204ENSMUST00000226782 949 ntBASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.1■□□□□ 0.49
Ccdc28bQ8CEG5 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Gm45102-201ENSMUST00000207427 857 ntBASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28bQ8CEG5 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms