Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trub1Q8C0D0 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.97■□□□□ 0.63
Trub1Q8C0D0 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trub1Q8C0D0 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.97■□□□□ 0.63
Trub1Q8C0D0 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trub1Q8C0D0 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.97■□□□□ 0.63
Trub1Q8C0D0 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trub1Q8C0D0 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trub1Q8C0D0 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trub1Q8C0D0 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trub1Q8C0D0 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trub1Q8C0D0 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.97■□□□□ 0.63
Trub1Q8C0D0 Gm35558-201ENSMUST00000222675 2219 ntBASIC18.97■□□□□ 0.63
Trub1Q8C0D0 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trub1Q8C0D0 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trub1Q8C0D0 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trub1Q8C0D0 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC18.96■□□□□ 0.63
Trub1Q8C0D0 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trub1Q8C0D0 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trub1Q8C0D0 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Trub1Q8C0D0 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Trub1Q8C0D0 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trub1Q8C0D0 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trub1Q8C0D0 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.94■□□□□ 0.62
Trub1Q8C0D0 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.94■□□□□ 0.62
Trub1Q8C0D0 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.94■□□□□ 0.62
Trub1Q8C0D0 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trub1Q8C0D0 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
Trub1Q8C0D0 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trub1Q8C0D0 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trub1Q8C0D0 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trub1Q8C0D0 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trub1Q8C0D0 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trub1Q8C0D0 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trub1Q8C0D0 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trub1Q8C0D0 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trub1Q8C0D0 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trub1Q8C0D0 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trub1Q8C0D0 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trub1Q8C0D0 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trub1Q8C0D0 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.91■□□□□ 0.62
Trub1Q8C0D0 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trub1Q8C0D0 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trub1Q8C0D0 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trub1Q8C0D0 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trub1Q8C0D0 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trub1Q8C0D0 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trub1Q8C0D0 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trub1Q8C0D0 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC18.9■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms