Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Ddx55Q6ZPL9 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddx55Q6ZPL9 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddx55Q6ZPL9 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddx55Q6ZPL9 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Mir6349-201ENSMUST00000184059 97 ntBASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx55Q6ZPL9 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 Gm10459-201ENSMUST00000202708 1155 ntBASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Ddx55Q6ZPL9 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx55Q6ZPL9 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
Ddx55Q6ZPL9 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx55Q6ZPL9 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx55Q6ZPL9 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx55Q6ZPL9 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx55Q6ZPL9 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx55Q6ZPL9 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx55Q6ZPL9 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Ddx55Q6ZPL9 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx55Q6ZPL9 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx55Q6ZPL9 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx55Q6ZPL9 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 AC166341.7-201ENSMUST00000221698 126 ntBASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 AC124603.1-201ENSMUST00000223843 308 ntBASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx55Q6ZPL9 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
Ddx55Q6ZPL9 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC21.01■□□□□ 0.95
Ddx55Q6ZPL9 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx55Q6ZPL9 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx55Q6ZPL9 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx55Q6ZPL9 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC21.01■□□□□ 0.95
Ddx55Q6ZPL9 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC21.01■□□□□ 0.95
Ddx55Q6ZPL9 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx55Q6ZPL9 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx55Q6ZPL9 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx55Q6ZPL9 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC21■□□□□ 0.95
Ddx55Q6ZPL9 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21■□□□□ 0.95
Ddx55Q6ZPL9 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ddx55Q6ZPL9 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddx55Q6ZPL9 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddx55Q6ZPL9 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ddx55Q6ZPL9 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC21■□□□□ 0.95
Ddx55Q6ZPL9 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC21■□□□□ 0.95
Ddx55Q6ZPL9 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Ddx55Q6ZPL9 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddx55Q6ZPL9 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ddx55Q6ZPL9 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Ddx55Q6ZPL9 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddx55Q6ZPL9 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddx55Q6ZPL9 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Ddx55Q6ZPL9 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ddx55Q6ZPL9 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms