Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scaf4Q6PFF0 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.15■□□□□ 0.5
Scaf4Q6PFF0 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scaf4Q6PFF0 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Gm9847-201ENSMUST00000052528 599 ntBASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Scaf4Q6PFF0 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scaf4Q6PFF0 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Scaf4Q6PFF0 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scaf4Q6PFF0 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
Scaf4Q6PFF0 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.13■□□□□ 0.49
Scaf4Q6PFF0 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC18.13■□□□□ 0.49
Scaf4Q6PFF0 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scaf4Q6PFF0 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Scaf4Q6PFF0 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scaf4Q6PFF0 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC18.11■□□□□ 0.49
Scaf4Q6PFF0 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.11■□□□□ 0.49
Scaf4Q6PFF0 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scaf4Q6PFF0 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scaf4Q6PFF0 Gm37805-201ENSMUST00000192612 1094 ntBASIC18.11■□□□□ 0.49
Scaf4Q6PFF0 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scaf4Q6PFF0 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scaf4Q6PFF0 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scaf4Q6PFF0 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scaf4Q6PFF0 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scaf4Q6PFF0 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scaf4Q6PFF0 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scaf4Q6PFF0 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Scaf4Q6PFF0 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC18.08■□□□□ 0.49
Scaf4Q6PFF0 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Scaf4Q6PFF0 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Scaf4Q6PFF0 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Scaf4Q6PFF0 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC18.08■□□□□ 0.48
Scaf4Q6PFF0 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC18.08■□□□□ 0.48
Scaf4Q6PFF0 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Scaf4Q6PFF0 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC18.08■□□□□ 0.48
Scaf4Q6PFF0 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scaf4Q6PFF0 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scaf4Q6PFF0 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scaf4Q6PFF0 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scaf4Q6PFF0 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Scaf4Q6PFF0 Gm10167-201ENSMUST00000150411 1479 ntBASIC18.07■□□□□ 0.48
Scaf4Q6PFF0 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Scaf4Q6PFF0 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms