Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Shkbp1Q6P7W2 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shkbp1Q6P7W2 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shkbp1Q6P7W2 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
Shkbp1Q6P7W2 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Mir5122-201ENSMUST00000175004 89 ntBASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Gm38285-201ENSMUST00000192928 922 ntBASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Gm7977-201ENSMUST00000193787 748 ntBASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Gm10138-203ENSMUST00000206952 366 ntBASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shkbp1Q6P7W2 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shkbp1Q6P7W2 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shkbp1Q6P7W2 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shkbp1Q6P7W2 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shkbp1Q6P7W2 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shkbp1Q6P7W2 Gm29994-201ENSMUST00000195495 1193 ntBASIC19.2■□□□□ 0.66
Shkbp1Q6P7W2 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC19.2■□□□□ 0.66
Shkbp1Q6P7W2 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Shkbp1Q6P7W2 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shkbp1Q6P7W2 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shkbp1Q6P7W2 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Shkbp1Q6P7W2 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Gm43183-201ENSMUST00000200632 547 ntBASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shkbp1Q6P7W2 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.18■□□□□ 0.66
Shkbp1Q6P7W2 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Gm15375-201ENSMUST00000119510 849 ntBASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Shkbp1Q6P7W2 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Gm18025-201ENSMUST00000221733 862 ntBASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shkbp1Q6P7W2 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shkbp1Q6P7W2 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Shkbp1Q6P7W2 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shkbp1Q6P7W2 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shkbp1Q6P7W2 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shkbp1Q6P7W2 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.15■□□□□ 0.66
Shkbp1Q6P7W2 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC19.15■□□□□ 0.66
Shkbp1Q6P7W2 Gm42545-201ENSMUST00000202755 922 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms