Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Gm14281-201ENSMUST00000121700 1294 ntBASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Gm10602-201ENSMUST00000098239 609 ntBASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Gm13234-201ENSMUST00000120010 747 ntBASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Sh3rf1Q69ZI1 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Gm27801-201ENSMUST00000184174 223 ntBASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sh3rf1Q69ZI1 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Sh3rf1Q69ZI1 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Sh3rf1Q69ZI1 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Sh3rf1Q69ZI1 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Sh3rf1Q69ZI1 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Sh3rf1Q69ZI1 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
Sh3rf1Q69ZI1 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Sh3rf1Q69ZI1 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Sh3rf1Q69ZI1 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Sh3rf1Q69ZI1 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sh3rf1Q69ZI1 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sh3rf1Q69ZI1 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Sh3rf1Q69ZI1 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Sh3rf1Q69ZI1 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sh3rf1Q69ZI1 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Sh3rf1Q69ZI1 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC18.57■□□□□ 0.56
Sh3rf1Q69ZI1 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sh3rf1Q69ZI1 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Sh3rf1Q69ZI1 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sh3rf1Q69ZI1 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sh3rf1Q69ZI1 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sh3rf1Q69ZI1 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Sh3rf1Q69ZI1 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms