Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col11a1Q61245 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col11a1Q61245 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col11a1Q61245 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Col11a1Q61245 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col11a1Q61245 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col11a1Q61245 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC20.85■□□□□ 0.93
Col11a1Q61245 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Col11a1Q61245 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col11a1Q61245 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col11a1Q61245 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Col11a1Q61245 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col11a1Q61245 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col11a1Q61245 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col11a1Q61245 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Col11a1Q61245 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC20.84■□□□□ 0.93
Col11a1Q61245 Gm18101-201ENSMUST00000215769 548 ntBASIC20.84■□□□□ 0.93
Col11a1Q61245 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.84■□□□□ 0.93
Col11a1Q61245 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col11a1Q61245 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col11a1Q61245 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Col11a1Q61245 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col11a1Q61245 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col11a1Q61245 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
Col11a1Q61245 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Col11a1Q61245 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col11a1Q61245 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Col11a1Q61245 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Col11a1Q61245 Gm7284-201ENSMUST00000131667 944 ntBASIC20.83■□□□□ 0.92
Col11a1Q61245 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC20.83■□□□□ 0.92
Col11a1Q61245 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC20.83■□□□□ 0.92
Col11a1Q61245 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC20.83■□□□□ 0.92
Col11a1Q61245 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Col11a1Q61245 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col11a1Q61245 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col11a1Q61245 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Col11a1Q61245 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col11a1Q61245 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col11a1Q61245 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col11a1Q61245 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
Col11a1Q61245 Gm27463-201ENSMUST00000183569 57 ntBASIC20.81■□□□□ 0.92
Col11a1Q61245 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC20.81■□□□□ 0.92
Col11a1Q61245 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col11a1Q61245 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
Col11a1Q61245 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Col11a1Q61245 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col11a1Q61245 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Col11a1Q61245 Gm10654-201ENSMUST00000098653 1633 ntBASIC20.81■□□□□ 0.92
Col11a1Q61245 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col11a1Q61245 AC166341.7-201ENSMUST00000221698 126 ntBASIC20.81■□□□□ 0.92
Col11a1Q61245 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col11a1Q61245 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col11a1Q61245 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Col11a1Q61245 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col11a1Q61245 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col11a1Q61245 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col11a1Q61245 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC20.8■□□□□ 0.92
Col11a1Q61245 Gm43353-201ENSMUST00000199224 1295 ntBASIC20.8■□□□□ 0.92
Col11a1Q61245 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col11a1Q61245 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col11a1Q61245 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col11a1Q61245 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col11a1Q61245 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.8■□□□□ 0.92
Col11a1Q61245 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Col11a1Q61245 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col11a1Q61245 Mir2861-201ENSMUST00000175539 82 ntBASIC20.79■□□□□ 0.92
Col11a1Q61245 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col11a1Q61245 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col11a1Q61245 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col11a1Q61245 Gm14859-201ENSMUST00000117752 357 ntBASIC20.78■□□□□ 0.92
Col11a1Q61245 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC20.78■□□□□ 0.92
Col11a1Q61245 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Col11a1Q61245 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col11a1Q61245 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col11a1Q61245 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col11a1Q61245 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col11a1Q61245 AC159205.3-201ENSMUST00000224614 874 ntBASIC20.78■□□□□ 0.92
Col11a1Q61245 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col11a1Q61245 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col11a1Q61245 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Col11a1Q61245 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col11a1Q61245 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col11a1Q61245 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Col11a1Q61245 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col11a1Q61245 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col11a1Q61245 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC20.77■□□□□ 0.92
Col11a1Q61245 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC20.77■□□□□ 0.92
Col11a1Q61245 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Col11a1Q61245 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Col11a1Q61245 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col11a1Q61245 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Col11a1Q61245 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col11a1Q61245 Gm37805-201ENSMUST00000192612 1094 ntBASIC20.76■□□□□ 0.91
Col11a1Q61245 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col11a1Q61245 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col11a1Q61245 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col11a1Q61245 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col11a1Q61245 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col11a1Q61245 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC20.76■□□□□ 0.91
Col11a1Q61245 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms