Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Col12a1Q60847 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col12a1Q60847 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.35■□□□□ 0.53
Col12a1Q60847 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col12a1Q60847 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col12a1Q60847 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Col12a1Q60847 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Col12a1Q60847 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC18.34■□□□□ 0.53
Col12a1Q60847 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.34■□□□□ 0.53
Col12a1Q60847 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col12a1Q60847 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col12a1Q60847 Gm27704-201ENSMUST00000185094 107 ntBASIC18.34■□□□□ 0.53
Col12a1Q60847 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.34■□□□□ 0.53
Col12a1Q60847 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col12a1Q60847 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC18.34■□□□□ 0.53
Col12a1Q60847 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Col12a1Q60847 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col12a1Q60847 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col12a1Q60847 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC18.33■□□□□ 0.53
Col12a1Q60847 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC18.33■□□□□ 0.53
Col12a1Q60847 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col12a1Q60847 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col12a1Q60847 Gm17807-201ENSMUST00000186869 298 ntBASIC18.33■□□□□ 0.53
Col12a1Q60847 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col12a1Q60847 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col12a1Q60847 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col12a1Q60847 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Col12a1Q60847 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col12a1Q60847 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col12a1Q60847 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col12a1Q60847 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col12a1Q60847 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col12a1Q60847 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col12a1Q60847 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col12a1Q60847 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col12a1Q60847 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col12a1Q60847 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col12a1Q60847 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col12a1Q60847 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC18.32■□□□□ 0.52
Col12a1Q60847 AW822252-206ENSMUST00000208904 237 ntBASIC18.32■□□□□ 0.52
Col12a1Q60847 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC18.32■□□□□ 0.52
Col12a1Q60847 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col12a1Q60847 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col12a1Q60847 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Col12a1Q60847 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col12a1Q60847 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.32■□□□□ 0.52
Col12a1Q60847 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col12a1Q60847 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC18.31■□□□□ 0.52
Col12a1Q60847 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col12a1Q60847 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col12a1Q60847 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col12a1Q60847 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col12a1Q60847 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col12a1Q60847 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col12a1Q60847 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Col12a1Q60847 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col12a1Q60847 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Col12a1Q60847 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC18.3■□□□□ 0.52
Col12a1Q60847 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.3■□□□□ 0.52
Col12a1Q60847 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col12a1Q60847 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Col12a1Q60847 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col12a1Q60847 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Col12a1Q60847 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col12a1Q60847 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
Col12a1Q60847 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC18.3■□□□□ 0.52
Col12a1Q60847 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col12a1Q60847 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col12a1Q60847 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col12a1Q60847 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col12a1Q60847 Gm43514-201ENSMUST00000198852 424 ntBASIC18.29■□□□□ 0.52
Col12a1Q60847 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col12a1Q60847 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col12a1Q60847 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col12a1Q60847 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col12a1Q60847 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC18.29■□□□□ 0.52
Col12a1Q60847 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.29■□□□□ 0.52
Col12a1Q60847 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col12a1Q60847 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col12a1Q60847 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC18.29■□□□□ 0.52
Col12a1Q60847 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col12a1Q60847 Zfp783-201ENSMUST00000095946 670 ntBASIC18.29■□□□□ 0.52
Col12a1Q60847 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col12a1Q60847 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Col12a1Q60847 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col12a1Q60847 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.28■□□□□ 0.52
Col12a1Q60847 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col12a1Q60847 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC18.28■□□□□ 0.52
Col12a1Q60847 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col12a1Q60847 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col12a1Q60847 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col12a1Q60847 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col12a1Q60847 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col12a1Q60847 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col12a1Q60847 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC18.28■□□□□ 0.52
Col12a1Q60847 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col12a1Q60847 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col12a1Q60847 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col12a1Q60847 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC18.28■□□□□ 0.52
Col12a1Q60847 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms