Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp28Q5I043 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp28Q5I043 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp28Q5I043 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Usp28Q5I043 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp28Q5I043 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.92■□□□□ 0.94
Usp28Q5I043 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp28Q5I043 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp28Q5I043 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.92■□□□□ 0.94
Usp28Q5I043 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.91■□□□□ 0.94
Usp28Q5I043 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Usp28Q5I043 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp28Q5I043 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp28Q5I043 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp28Q5I043 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp28Q5I043 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.91■□□□□ 0.94
Usp28Q5I043 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp28Q5I043 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC20.91■□□□□ 0.94
Usp28Q5I043 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Usp28Q5I043 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp28Q5I043 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Usp28Q5I043 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Usp28Q5I043 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.9■□□□□ 0.94
Usp28Q5I043 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC20.9■□□□□ 0.94
Usp28Q5I043 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp28Q5I043 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Usp28Q5I043 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Usp28Q5I043 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Usp28Q5I043 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp28Q5I043 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Usp28Q5I043 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp28Q5I043 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp28Q5I043 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp28Q5I043 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Usp28Q5I043 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Usp28Q5I043 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp28Q5I043 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp28Q5I043 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Usp28Q5I043 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Usp28Q5I043 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp28Q5I043 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Usp28Q5I043 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.88■□□□□ 0.93
Usp28Q5I043 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Usp28Q5I043 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.88■□□□□ 0.93
Usp28Q5I043 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.88■□□□□ 0.93
Usp28Q5I043 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp28Q5I043 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Usp28Q5I043 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Usp28Q5I043 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Usp28Q5I043 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp28Q5I043 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp28Q5I043 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.87■□□□□ 0.93
Usp28Q5I043 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp28Q5I043 Gm13234-201ENSMUST00000120010 747 ntBASIC20.87■□□□□ 0.93
Usp28Q5I043 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Usp28Q5I043 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp28Q5I043 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp28Q5I043 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.87■□□□□ 0.93
Usp28Q5I043 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp28Q5I043 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp28Q5I043 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp28Q5I043 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp28Q5I043 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Usp28Q5I043 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.86■□□□□ 0.93
Usp28Q5I043 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.86■□□□□ 0.93
Usp28Q5I043 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp28Q5I043 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp28Q5I043 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.86■□□□□ 0.93
Usp28Q5I043 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp28Q5I043 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Usp28Q5I043 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp28Q5I043 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.85■□□□□ 0.93
Usp28Q5I043 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp28Q5I043 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp28Q5I043 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Usp28Q5I043 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp28Q5I043 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Usp28Q5I043 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms