Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.49■□□□□ 0.71
Shmt1P50431 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.49■□□□□ 0.71
Shmt1P50431 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.49■□□□□ 0.71
Shmt1P50431 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.49■□□□□ 0.71
Shmt1P50431 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Shmt1P50431 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.48■□□□□ 0.71
Shmt1P50431 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Shmt1P50431 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Shmt1P50431 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Shmt1P50431 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
Shmt1P50431 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
Shmt1P50431 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Shmt1P50431 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Shmt1P50431 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.47■□□□□ 0.71
Shmt1P50431 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Shmt1P50431 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Shmt1P50431 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC19.47■□□□□ 0.71
Shmt1P50431 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Shmt1P50431 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Shmt1P50431 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Shmt1P50431 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.47■□□□□ 0.71
Shmt1P50431 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Shmt1P50431 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.47■□□□□ 0.71
Shmt1P50431 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Shmt1P50431 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.47■□□□□ 0.71
Shmt1P50431 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Shmt1P50431 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Shmt1P50431 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Shmt1P50431 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Shmt1P50431 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Shmt1P50431 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Shmt1P50431 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
Shmt1P50431 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Shmt1P50431 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Shmt1P50431 Gm20760-201ENSMUST00000179197 648 ntBASIC19.46■□□□□ 0.71
Shmt1P50431 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.46■□□□□ 0.71
Shmt1P50431 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.46■□□□□ 0.71
Shmt1P50431 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Shmt1P50431 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.45■□□□□ 0.7
Shmt1P50431 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Shmt1P50431 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Shmt1P50431 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Shmt1P50431 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.45■□□□□ 0.7
Shmt1P50431 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Shmt1P50431 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Shmt1P50431 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Shmt1P50431 Gm37856-201ENSMUST00000191634 999 ntBASIC19.45■□□□□ 0.7
Shmt1P50431 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.45■□□□□ 0.7
Shmt1P50431 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Shmt1P50431 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Shmt1P50431 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Shmt1P50431 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Shmt1P50431 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Shmt1P50431 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Shmt1P50431 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Shmt1P50431 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Shmt1P50431 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Shmt1P50431 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Shmt1P50431 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Shmt1P50431 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.44■□□□□ 0.7
Shmt1P50431 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Shmt1P50431 Gm12896-201ENSMUST00000118430 226 ntBASIC19.44■□□□□ 0.7
Shmt1P50431 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
Shmt1P50431 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Shmt1P50431 Gm27275-201ENSMUST00000184318 272 ntBASIC19.44■□□□□ 0.7
Shmt1P50431 Gm10616-201ENSMUST00000205285 2127 ntBASIC19.44■□□□□ 0.7
Shmt1P50431 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Shmt1P50431 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Shmt1P50431 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Shmt1P50431 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.43■□□□□ 0.7
Shmt1P50431 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Shmt1P50431 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shmt1P50431 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shmt1P50431 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC19.43■□□□□ 0.7
Shmt1P50431 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.43■□□□□ 0.7
Shmt1P50431 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Shmt1P50431 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shmt1P50431 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Shmt1P50431 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Shmt1P50431 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shmt1P50431 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shmt1P50431 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shmt1P50431 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shmt1P50431 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms