Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.22■□□□□ 0.67
Usp4P35123 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Usp4P35123 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usp4P35123 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Usp4P35123 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19.22■□□□□ 0.67
Usp4P35123 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.22■□□□□ 0.67
Usp4P35123 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC19.22■□□□□ 0.67
Usp4P35123 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp4P35123 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp4P35123 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC19.21■□□□□ 0.67
Usp4P35123 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.21■□□□□ 0.67
Usp4P35123 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Usp4P35123 Gm27405-201ENSMUST00000184201 112 ntBASIC19.21■□□□□ 0.67
Usp4P35123 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp4P35123 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC19.21■□□□□ 0.67
Usp4P35123 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp4P35123 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Usp4P35123 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp4P35123 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp4P35123 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp4P35123 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp4P35123 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.21■□□□□ 0.66
Usp4P35123 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Usp4P35123 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.2■□□□□ 0.66
Usp4P35123 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC19.2■□□□□ 0.66
Usp4P35123 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Usp4P35123 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.2■□□□□ 0.66
Usp4P35123 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Usp4P35123 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Usp4P35123 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC19.2■□□□□ 0.66
Usp4P35123 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp4P35123 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp4P35123 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp4P35123 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp4P35123 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp4P35123 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp4P35123 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.19■□□□□ 0.66
Usp4P35123 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.19■□□□□ 0.66
Usp4P35123 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.19■□□□□ 0.66
Usp4P35123 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Usp4P35123 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Usp4P35123 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.18■□□□□ 0.66
Usp4P35123 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.18■□□□□ 0.66
Usp4P35123 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Usp4P35123 Gm10129-202ENSMUST00000193100 1316 ntBASIC19.18■□□□□ 0.66
Usp4P35123 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Usp4P35123 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19.17■□□□□ 0.66
Usp4P35123 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp4P35123 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC19.17■□□□□ 0.66
Usp4P35123 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Usp4P35123 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp4P35123 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp4P35123 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp4P35123 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp4P35123 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC19.17■□□□□ 0.66
Usp4P35123 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC19.17■□□□□ 0.66
Usp4P35123 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp4P35123 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Usp4P35123 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Usp4P35123 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Usp4P35123 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp4P35123 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp4P35123 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.17■□□□□ 0.66
Usp4P35123 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp4P35123 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp4P35123 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Usp4P35123 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp4P35123 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp4P35123 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp4P35123 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp4P35123 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp4P35123 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp4P35123 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp4P35123 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usp4P35123 Gm18671-201ENSMUST00000214826 683 ntBASIC19.16■□□□□ 0.66
Usp4P35123 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp4P35123 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms