Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col1a1P11087 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col1a1P11087 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col1a1P11087 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Col1a1P11087 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Col1a1P11087 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col1a1P11087 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
Col1a1P11087 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC21.69■■□□□ 1.06
Col1a1P11087 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col1a1P11087 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col1a1P11087 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC21.69■■□□□ 1.06
Col1a1P11087 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col1a1P11087 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC21.68■■□□□ 1.06
Col1a1P11087 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col1a1P11087 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col1a1P11087 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC21.68■■□□□ 1.06
Col1a1P11087 Gm18959-201ENSMUST00000208954 655 ntBASIC21.68■■□□□ 1.06
Col1a1P11087 AC166341.7-201ENSMUST00000221698 126 ntBASIC21.68■■□□□ 1.06
Col1a1P11087 Gm18032-201ENSMUST00000222541 538 ntBASIC21.68■■□□□ 1.06
Col1a1P11087 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC21.68■■□□□ 1.06
Col1a1P11087 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Col1a1P11087 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.68■■□□□ 1.06
Col1a1P11087 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Col1a1P11087 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Col1a1P11087 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Col1a1P11087 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col1a1P11087 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col1a1P11087 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC21.67■■□□□ 1.06
Col1a1P11087 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Col1a1P11087 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col1a1P11087 AC126028.2-201ENSMUST00000228100 1833 ntBASIC21.67■■□□□ 1.06
Col1a1P11087 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col1a1P11087 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col1a1P11087 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC21.66■■□□□ 1.06
Col1a1P11087 Gm23634-201ENSMUST00000175071 91 ntBASIC21.66■■□□□ 1.06
Col1a1P11087 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col1a1P11087 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col1a1P11087 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col1a1P11087 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Col1a1P11087 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col1a1P11087 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col1a1P11087 Gm10013-201ENSMUST00000106074 672 ntBASIC21.65■■□□□ 1.06
Col1a1P11087 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col1a1P11087 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
Col1a1P11087 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col1a1P11087 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col1a1P11087 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col1a1P11087 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col1a1P11087 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Col1a1P11087 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Col1a1P11087 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC21.64■■□□□ 1.06
Col1a1P11087 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col1a1P11087 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC21.64■■□□□ 1.06
Col1a1P11087 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC21.64■■□□□ 1.06
Col1a1P11087 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC21.64■■□□□ 1.06
Col1a1P11087 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col1a1P11087 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col1a1P11087 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC21.64■■□□□ 1.06
Col1a1P11087 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
Col1a1P11087 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Col1a1P11087 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col1a1P11087 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col1a1P11087 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col1a1P11087 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Col1a1P11087 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col1a1P11087 Gm27741-201ENSMUST00000185060 237 ntBASIC21.63■■□□□ 1.05
Col1a1P11087 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
Col1a1P11087 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
Col1a1P11087 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col1a1P11087 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.62■■□□□ 1.05
Col1a1P11087 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col1a1P11087 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col1a1P11087 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC21.62■■□□□ 1.05
Col1a1P11087 Gm10517-202ENSMUST00000192970 758 ntBASIC21.62■■□□□ 1.05
Col1a1P11087 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Col1a1P11087 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC21.62■■□□□ 1.05
Col1a1P11087 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col1a1P11087 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col1a1P11087 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col1a1P11087 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Col1a1P11087 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Col1a1P11087 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col1a1P11087 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col1a1P11087 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Col1a1P11087 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col1a1P11087 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Col1a1P11087 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col1a1P11087 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC21.6■■□□□ 1.05
Col1a1P11087 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Col1a1P11087 Gm6345-202ENSMUST00000180900 204 ntBASIC21.6■■□□□ 1.05
Col1a1P11087 Gm33142-201ENSMUST00000193913 867 ntBASIC21.6■■□□□ 1.05
Col1a1P11087 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC21.6■■□□□ 1.05
Col1a1P11087 Gm45058-201ENSMUST00000205810 766 ntBASIC21.6■■□□□ 1.05
Col1a1P11087 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col1a1P11087 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.6■■□□□ 1.05
Col1a1P11087 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col1a1P11087 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col1a1P11087 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC21.59■■□□□ 1.05
Col1a1P11087 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC21.59■■□□□ 1.05
Col1a1P11087 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms