Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm11539-201ENSMUST00000119837 557 ntBASIC16.75■□□□□ 0.27
Col5a1O88207 Gm13436-201ENSMUST00000120418 567 ntBASIC16.75■□□□□ 0.27
Col5a1O88207 Gm13559-201ENSMUST00000120476 863 ntBASIC16.75■□□□□ 0.27
Col5a1O88207 Gm21814-202ENSMUST00000203277 873 ntBASIC16.75■□□□□ 0.27
Col5a1O88207 Arhgef4-208ENSMUST00000211073 171 ntBASIC16.75■□□□□ 0.27
Col5a1O88207 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col5a1O88207 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC16.75■□□□□ 0.27
Col5a1O88207 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col5a1O88207 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col5a1O88207 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col5a1O88207 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col5a1O88207 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col5a1O88207 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col5a1O88207 Gm16042-201ENSMUST00000204813 1247 ntBASIC16.75■□□□□ 0.27
Col5a1O88207 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col5a1O88207 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col5a1O88207 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC16.74■□□□□ 0.27
Col5a1O88207 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC16.74■□□□□ 0.27
Col5a1O88207 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Gm33142-201ENSMUST00000193913 867 ntBASIC16.74■□□□□ 0.27
Col5a1O88207 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Col5a1O88207 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
Col5a1O88207 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col5a1O88207 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col5a1O88207 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col5a1O88207 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Col5a1O88207 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
Col5a1O88207 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col5a1O88207 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col5a1O88207 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col5a1O88207 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col5a1O88207 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col5a1O88207 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Col5a1O88207 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC16.73■□□□□ 0.27
Col5a1O88207 AC107452.1-201ENSMUST00000227963 481 ntBASIC16.73■□□□□ 0.27
Col5a1O88207 Zfp783-201ENSMUST00000095946 670 ntBASIC16.73■□□□□ 0.27
Col5a1O88207 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col5a1O88207 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col5a1O88207 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col5a1O88207 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC16.72■□□□□ 0.27
Col5a1O88207 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col5a1O88207 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col5a1O88207 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col5a1O88207 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col5a1O88207 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col5a1O88207 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col5a1O88207 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col5a1O88207 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Col5a1O88207 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col5a1O88207 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col5a1O88207 Gm6345-202ENSMUST00000180900 204 ntBASIC16.71■□□□□ 0.27
Col5a1O88207 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC16.71■□□□□ 0.27
Col5a1O88207 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col5a1O88207 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col5a1O88207 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Col5a1O88207 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col5a1O88207 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC16.71■□□□□ 0.26
Col5a1O88207 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Col5a1O88207 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col5a1O88207 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col5a1O88207 Gm23634-201ENSMUST00000175071 91 ntBASIC16.7■□□□□ 0.26
Col5a1O88207 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col5a1O88207 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col5a1O88207 Flg-201ENSMUST00000050758 1488 ntBASIC16.7■□□□□ 0.26
Col5a1O88207 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col5a1O88207 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col5a1O88207 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Col5a1O88207 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col5a1O88207 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col5a1O88207 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col5a1O88207 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Col5a1O88207 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col5a1O88207 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col5a1O88207 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col5a1O88207 Gm9103-201ENSMUST00000119371 405 ntBASIC16.69■□□□□ 0.26
Col5a1O88207 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col5a1O88207 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Col5a1O88207 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col5a1O88207 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC16.69■□□□□ 0.26
Col5a1O88207 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col5a1O88207 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col5a1O88207 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col5a1O88207 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col5a1O88207 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Col5a1O88207 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col5a1O88207 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col5a1O88207 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col5a1O88207 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col5a1O88207 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms