Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd3B1AR17 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd3B1AR17 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd3B1AR17 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Chd3B1AR17 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Chd3B1AR17 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd3B1AR17 Gm10812-201ENSMUST00000099864 546 ntBASIC18.07■□□□□ 0.48
Chd3B1AR17 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Chd3B1AR17 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Chd3B1AR17 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Chd3B1AR17 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Chd3B1AR17 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC18.06■□□□□ 0.48
Chd3B1AR17 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Chd3B1AR17 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Chd3B1AR17 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18.06■□□□□ 0.48
Chd3B1AR17 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Chd3B1AR17 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Chd3B1AR17 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC18.06■□□□□ 0.48
Chd3B1AR17 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Gm13181-201ENSMUST00000120117 1069 ntBASIC18.05■□□□□ 0.48
Chd3B1AR17 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC18.05■□□□□ 0.48
Chd3B1AR17 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC18.05■□□□□ 0.48
Chd3B1AR17 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Chd3B1AR17 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
Chd3B1AR17 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.05■□□□□ 0.48
Chd3B1AR17 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.05■□□□□ 0.48
Chd3B1AR17 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Chd3B1AR17 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Chd3B1AR17 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC18.04■□□□□ 0.48
Chd3B1AR17 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Chd3B1AR17 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Chd3B1AR17 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
Chd3B1AR17 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC18.04■□□□□ 0.48
Chd3B1AR17 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Chd3B1AR17 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Chd3B1AR17 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Chd3B1AR17 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC18.04■□□□□ 0.48
Chd3B1AR17 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC18.04■□□□□ 0.48
Chd3B1AR17 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Chd3B1AR17 Gm10698-201ENSMUST00000182663 604 ntBASIC18.03■□□□□ 0.48
Chd3B1AR17 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chd3B1AR17 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chd3B1AR17 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Chd3B1AR17 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Chd3B1AR17 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Chd3B1AR17 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Chd3B1AR17 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chd3B1AR17 AC153881.1-201ENSMUST00000214448 284 ntBASIC18.03■□□□□ 0.48
Chd3B1AR17 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chd3B1AR17 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.03■□□□□ 0.48
Chd3B1AR17 Golph3-205ENSMUST00000228671 2842 ntBASIC18.03■□□□□ 0.48
Chd3B1AR17 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Chd3B1AR17 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Chd3B1AR17 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC18.02■□□□□ 0.48
Chd3B1AR17 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Chd3B1AR17 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Chd3B1AR17 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Chd3B1AR17 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Chd3B1AR17 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC18.02■□□□□ 0.47
Chd3B1AR17 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
Chd3B1AR17 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.01■□□□□ 0.47
Chd3B1AR17 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chd3B1AR17 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chd3B1AR17 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chd3B1AR17 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chd3B1AR17 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.01■□□□□ 0.47
Chd3B1AR17 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Chd3B1AR17 Gm10252-201ENSMUST00000209541 832 ntBASIC18.01■□□□□ 0.47
Chd3B1AR17 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chd3B1AR17 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chd3B1AR17 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chd3B1AR17 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18■□□□□ 0.47
Chd3B1AR17 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chd3B1AR17 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chd3B1AR17 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chd3B1AR17 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18■□□□□ 0.47
Chd3B1AR17 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC18■□□□□ 0.47
Chd3B1AR17 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18■□□□□ 0.47
Chd3B1AR17 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Chd3B1AR17 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18■□□□□ 0.47
Chd3B1AR17 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Chd3B1AR17 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chd3B1AR17 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC18■□□□□ 0.47
Chd3B1AR17 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18■□□□□ 0.47
Chd3B1AR17 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chd3B1AR17 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chd3B1AR17 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Chd3B1AR17 Gm44544-201ENSMUST00000207052 1844 ntBASIC18■□□□□ 0.47
Chd3B1AR17 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms