Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
Smarca1Q6PGB8 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC27.74■■■□□ 2.03
Smarca1Q6PGB8 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Smarca1Q6PGB8 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Smarca1Q6PGB8 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Smarca1Q6PGB8 Gm30346-201ENSMUST00000218641 1699 ntBASIC27.73■■■□□ 2.03
Smarca1Q6PGB8 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC27.73■■■□□ 2.03
Smarca1Q6PGB8 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC27.71■■■□□ 2.03
Smarca1Q6PGB8 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
Smarca1Q6PGB8 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Smarca1Q6PGB8 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Smarca1Q6PGB8 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
Smarca1Q6PGB8 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC27.69■■■□□ 2.02
Smarca1Q6PGB8 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
Smarca1Q6PGB8 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
Smarca1Q6PGB8 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Smarca1Q6PGB8 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
Smarca1Q6PGB8 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC27.67■■■□□ 2.02
Smarca1Q6PGB8 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Smarca1Q6PGB8 Amer2-203ENSMUST00000225247 2662 ntBASIC27.65■■■□□ 2.02
Smarca1Q6PGB8 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Smarca1Q6PGB8 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Smarca1Q6PGB8 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC27.64■■■□□ 2.02
Smarca1Q6PGB8 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC27.64■■■□□ 2.01
Smarca1Q6PGB8 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
Smarca1Q6PGB8 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC27.63■■■□□ 2.01
Smarca1Q6PGB8 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Smarca1Q6PGB8 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Smarca1Q6PGB8 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
Smarca1Q6PGB8 Gm24970-201ENSMUST00000175582 82 ntBASIC27.6■■■□□ 2.01
Smarca1Q6PGB8 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
Smarca1Q6PGB8 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC27.59■■■□□ 2.01
Smarca1Q6PGB8 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Smarca1Q6PGB8 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Smarca1Q6PGB8 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC27.57■■■□□ 2
Smarca1Q6PGB8 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC27.57■■■□□ 2
Smarca1Q6PGB8 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Smarca1Q6PGB8 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
Smarca1Q6PGB8 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC27.55■■■□□ 2
Smarca1Q6PGB8 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC27.54■■■□□ 2
Smarca1Q6PGB8 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Smarca1Q6PGB8 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC27.53■■■□□ 2
Smarca1Q6PGB8 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Smarca1Q6PGB8 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC27.53■■■□□ 2
Smarca1Q6PGB8 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Smarca1Q6PGB8 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■■□□ 2
Smarca1Q6PGB8 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC27.51■■□□□ 1.99
Smarca1Q6PGB8 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Smarca1Q6PGB8 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Smarca1Q6PGB8 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Smarca1Q6PGB8 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
Smarca1Q6PGB8 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
Smarca1Q6PGB8 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Smarca1Q6PGB8 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
Smarca1Q6PGB8 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Smarca1Q6PGB8 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC27.47■■□□□ 1.99
Smarca1Q6PGB8 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Smarca1Q6PGB8 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Smarca1Q6PGB8 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
Smarca1Q6PGB8 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC27.46■■□□□ 1.99
Smarca1Q6PGB8 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Smarca1Q6PGB8 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Smarca1Q6PGB8 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Smarca1Q6PGB8 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Smarca1Q6PGB8 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Smarca1Q6PGB8 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Smarca1Q6PGB8 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC27.42■■□□□ 1.98
Smarca1Q6PGB8 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
Smarca1Q6PGB8 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Smarca1Q6PGB8 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Smarca1Q6PGB8 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Smarca1Q6PGB8 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
Smarca1Q6PGB8 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Smarca1Q6PGB8 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC27.39■■□□□ 1.97
Smarca1Q6PGB8 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC27.38■■□□□ 1.97
Smarca1Q6PGB8 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC27.37■■□□□ 1.97
Smarca1Q6PGB8 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Smarca1Q6PGB8 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Smarca1Q6PGB8 Gm43863-201ENSMUST00000203822 1192 ntBASIC27.37■■□□□ 1.97
Smarca1Q6PGB8 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Smarca1Q6PGB8 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Smarca1Q6PGB8 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Smarca1Q6PGB8 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Smarca1Q6PGB8 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC27.34■■□□□ 1.97
Smarca1Q6PGB8 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Smarca1Q6PGB8 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Smarca1Q6PGB8 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
Smarca1Q6PGB8 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Smarca1Q6PGB8 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Smarca1Q6PGB8 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Smarca1Q6PGB8 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Smarca1Q6PGB8 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC27.31■■□□□ 1.96
Smarca1Q6PGB8 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Smarca1Q6PGB8 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Smarca1Q6PGB8 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC27.31■■□□□ 1.96
Smarca1Q6PGB8 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC27.3■■□□□ 1.96
Smarca1Q6PGB8 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
Smarca1Q6PGB8 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
Smarca1Q6PGB8 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Smarca1Q6PGB8 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms