Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Abr-204ENSMUST00000108407 4811 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Zfp426-210ENSMUST00000167457 4262 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Gm45753-201ENSMUST00000116473 2753 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
Cux1P53564 Vmn1r40-202ENSMUST00000226925 3011 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
Cux1P53564 Pus7-204ENSMUST00000131992 3645 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Gm9506-201ENSMUST00000118516 320 ntBASIC10.93□□□□□ -0.66
Cux1P53564 Gm14375-201ENSMUST00000119490 855 ntBASIC10.93□□□□□ -0.66
Cux1P53564 Gm15471-201ENSMUST00000145893 625 ntTSL 2 BASIC10.93□□□□□ -0.66
Cux1P53564 Gm12148-201ENSMUST00000153791 292 ntTSL 3 BASIC10.93□□□□□ -0.66
Cux1P53564 Gm15898-201ENSMUST00000162213 627 ntTSL 3 BASIC10.93□□□□□ -0.66
Cux1P53564 Gm6077-201ENSMUST00000196008 499 ntBASIC10.93□□□□□ -0.66
Cux1P53564 Gm31897-202ENSMUST00000206231 604 ntTSL 3 BASIC10.93□□□□□ -0.66
Cux1P53564 AC154642.1-201ENSMUST00000224173 740 ntBASIC10.93□□□□□ -0.66
Cux1P53564 AC154640.1-202ENSMUST00000227828 496 ntBASIC10.93□□□□□ -0.66
Cux1P53564 Utp14b-ps1-201ENSMUST00000197716 2265 ntBASIC10.93□□□□□ -0.66
Cux1P53564 Glrx2-204ENSMUST00000129653 3515 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Pdlim5-203ENSMUST00000090134 1722 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Mir99ahg-208ENSMUST00000182748 3151 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cux1P53564 Tlk2-203ENSMUST00000106939 5494 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Gm5841-201ENSMUST00000195307 2177 ntBASIC10.92□□□□□ -0.66
Cux1P53564 Gm10439-201ENSMUST00000101181 1977 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Cux1P53564 H60c-201ENSMUST00000170893 2817 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Daam1-205ENSMUST00000223272 5835 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Etl4-205ENSMUST00000114607 3055 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Cux1P53564 Gm6878-201ENSMUST00000100448 2018 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Prdm16-204ENSMUST00000105636 8426 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Ptprb-203ENSMUST00000218553 7016 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Cux1P53564 Gm15318-202ENSMUST00000146320 1661 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Adamts6-201ENSMUST00000065766 4822 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Cux1P53564 4931406P16Rik-201ENSMUST00000085592 5798 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Bcl2l11-203ENSMUST00000103210 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Triqk-203ENSMUST00000183345 3545 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
Cux1P53564 Aff1-201ENSMUST00000031256 8312 ntAPPRIS P4 TSL 5 BASIC10.92□□□□□ -0.66
Cux1P53564 Tdrkh-201ENSMUST00000045245 2642 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Gm37755-201ENSMUST00000195880 2179 ntBASIC10.92□□□□□ -0.66
Cux1P53564 Zfp599-201ENSMUST00000086281 3574 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Gm13983-201ENSMUST00000118018 865 ntBASIC10.92□□□□□ -0.66
Cux1P53564 Gm12518-201ENSMUST00000122075 779 ntBASIC10.92□□□□□ -0.66
Cux1P53564 Gm16249-201ENSMUST00000124055 1258 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 4930467D21Rik-202ENSMUST00000181724 570 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Gm37148-201ENSMUST00000195097 716 ntTSL 5 BASIC10.92□□□□□ -0.66
Cux1P53564 AC138765.3-201ENSMUST00000227981 423 ntBASIC10.92□□□□□ -0.66
Cux1P53564 Ninj2-201ENSMUST00000035244 823 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
Cux1P53564 Ugt1a6b-201ENSMUST00000113137 2249 ntAPPRIS P1 TSL 3 BASIC10.92□□□□□ -0.66
Cux1P53564 Snapc4-201ENSMUST00000035427 4363 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Nos2-201ENSMUST00000018610 4192 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Patj-203ENSMUST00000102792 3755 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Etl4-203ENSMUST00000114604 4786 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Afap1l2-203ENSMUST00000122359 3667 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cux1P53564 Gm45182-201ENSMUST00000207579 2404 ntBASIC10.91□□□□□ -0.66
Cux1P53564 Gm36041-201ENSMUST00000218971 2245 ntTSL 5 BASIC10.91□□□□□ -0.66
Cux1P53564 Dgkh-206ENSMUST00000228362 3308 ntBASIC10.91□□□□□ -0.66
Cux1P53564 Robo4-202ENSMUST00000115046 3878 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
Cux1P53564 Plcb1-201ENSMUST00000070724 3853 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cux1P53564 Gm10778-202ENSMUST00000189672 4735 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cux1P53564 Gm45407-201ENSMUST00000209499 3676 ntBASIC10.91□□□□□ -0.66
Cux1P53564 Smim26-201ENSMUST00000136628 471 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cux1P53564 Gm25435-201ENSMUST00000158277 267 ntBASIC10.91□□□□□ -0.66
Cux1P53564 G930045G22Rik-202ENSMUST00000161723 673 ntTSL 3 BASIC10.91□□□□□ -0.66
Cux1P53564 Cd68-201ENSMUST00000018918 1230 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cux1P53564 Gm31522-201ENSMUST00000207942 762 ntTSL 5 BASIC10.91□□□□□ -0.66
Cux1P53564 Gm7252-201ENSMUST00000223284 456 ntBASIC10.91□□□□□ -0.66
Cux1P53564 AC161374.1-201ENSMUST00000224191 794 ntBASIC10.91□□□□□ -0.66
Cux1P53564 Slc22a26-202ENSMUST00000120522 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cux1P53564 Arhgap1-201ENSMUST00000090614 2866 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cux1P53564 Lig3-201ENSMUST00000021039 5957 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Cux1P53564 Zfp871-202ENSMUST00000159086 5111 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cux1P53564 Siae-204ENSMUST00000215474 4947 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cux1P53564 2410089E03Rik-201ENSMUST00000110617 10469 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Cux1P53564 Abhd2-201ENSMUST00000037315 6877 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cux1P53564 Dclk1-207ENSMUST00000198412 4282 ntTSL 5 BASIC10.9□□□□□ -0.66
Cux1P53564 Gm15413-201ENSMUST00000155101 1935 ntTSL 2 BASIC10.9□□□□□ -0.66
Cux1P53564 Trmt13-201ENSMUST00000041524 3402 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cux1P53564 Gm14513-201ENSMUST00000117403 123 ntBASIC10.9□□□□□ -0.66
Cux1P53564 Gm22275-201ENSMUST00000122470 310 ntBASIC10.9□□□□□ -0.66
Cux1P53564 Gm13746-201ENSMUST00000133981 605 ntTSL 3 BASIC10.9□□□□□ -0.66
Cux1P53564 Sox5os4-201ENSMUST00000155562 365 ntTSL 3 BASIC10.9□□□□□ -0.66
Cux1P53564 Gm18799-201ENSMUST00000189104 913 ntBASIC10.9□□□□□ -0.66
Cux1P53564 Gm43748-201ENSMUST00000202329 1233 ntBASIC10.9□□□□□ -0.66
Cux1P53564 AC153557.1-201ENSMUST00000217697 403 ntBASIC10.9□□□□□ -0.66
Cux1P53564 D830013O20Rik-202ENSMUST00000221180 683 ntTSL 2 BASIC10.9□□□□□ -0.66
Cux1P53564 AC154558.1-201ENSMUST00000222278 415 ntBASIC10.9□□□□□ -0.66
Cux1P53564 AW822073-201ENSMUST00000075305 555 ntBASIC10.9□□□□□ -0.66
Cux1P53564 Myo7a-202ENSMUST00000107122 6867 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cux1P53564 Mapk9-204ENSMUST00000109178 1302 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cux1P53564 Zfp445-206ENSMUST00000216063 6189 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cux1P53564 Brd8-202ENSMUST00000097626 3005 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cux1P53564 Myo1h-205ENSMUST00000169347 3545 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Cux1P53564 Msantd4-201ENSMUST00000047173 2731 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cux1P53564 Cpsf2-201ENSMUST00000047357 5732 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cux1P53564 BB031773-201ENSMUST00000148892 3655 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cux1P53564 Gm26806-201ENSMUST00000180403 1519 ntTSL 5 BASIC10.9□□□□□ -0.66
Cux1P53564 Sema6a-210ENSMUST00000156422 3291 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Cux1P53564 Tmem87a-203ENSMUST00000110729 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cux1P53564 Gm43789-201ENSMUST00000199275 2472 ntBASIC10.9□□□□□ -0.67
Cux1P53564 Rtp4-201ENSMUST00000038423 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cux1P53564 Lmod1-201ENSMUST00000059352 3948 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cux1P53564 Zfp882-201ENSMUST00000110002 3152 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Gm22267-201ENSMUST00000104008 131 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Gm12842-201ENSMUST00000117298 476 ntBASIC10.89□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 108.7 ms