Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Phc3-206ENSMUST00000129817 3019 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Dbhos-201ENSMUST00000150024 4020 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Kcnb2-202ENSMUST00000175681 3963 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Cux1P53564 Tlr11-201ENSMUST00000063570 2993 ntAPPRIS ALT2 BASIC11.04□□□□□ -0.64
Cux1P53564 Ube3a-203ENSMUST00000200758 9856 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Trim12a-203ENSMUST00000106839 1486 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Nos1-202ENSMUST00000102557 4591 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Cux1P53564 Rassf6-206ENSMUST00000202784 1919 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Ofcc1-201ENSMUST00000054635 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Prdm10-205ENSMUST00000215847 3519 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Cux1P53564 Gm15759-201ENSMUST00000161126 3723 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Abcg8-201ENSMUST00000045714 3667 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Kel-201ENSMUST00000031899 2530 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Gm15789-201ENSMUST00000118992 1359 ntBASIC11.04□□□□□ -0.64
Cux1P53564 Ncam1-204ENSMUST00000193547 6050 ntAPPRIS P4 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Sap130-201ENSMUST00000025109 4015 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Gm19024-201ENSMUST00000194681 1319 ntBASIC11.04□□□□□ -0.64
Cux1P53564 Tbx5-201ENSMUST00000018407 3942 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Gm37499-201ENSMUST00000194683 3478 ntBASIC11.04□□□□□ -0.64
Cux1P53564 Cdh23-204ENSMUST00000105463 10991 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Cux1P53564 Lyg2-201ENSMUST00000078307 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Gm29571-201ENSMUST00000191547 1909 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Gm42674-201ENSMUST00000107330 446 ntAPPRIS P1 TSL 3 BASIC11.04□□□□□ -0.64
Cux1P53564 Gm18699-201ENSMUST00000190713 243 ntBASIC11.04□□□□□ -0.64
Cux1P53564 Gm38232-201ENSMUST00000193602 411 ntTSL 5 BASIC11.04□□□□□ -0.64
Cux1P53564 Gm44162-201ENSMUST00000203543 544 ntBASIC11.04□□□□□ -0.64
Cux1P53564 Gm44943-201ENSMUST00000207254 300 ntBASIC11.04□□□□□ -0.64
Cux1P53564 AC164436.1-201ENSMUST00000227074 772 ntBASIC11.04□□□□□ -0.64
Cux1P53564 Rps29-201ENSMUST00000037023 390 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Olfr275-201ENSMUST00000095085 960 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Cux1P53564 6720489N17Rik-203ENSMUST00000223338 1457 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Cux1P53564 Smcr8-201ENSMUST00000056907 7391 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cux1P53564 Mep1b-201ENSMUST00000082235 2286 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Slx4ip-202ENSMUST00000099311 5089 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Gm3460-201ENSMUST00000167882 1809 ntAPPRIS P5 TSL 5 BASIC11.03□□□□□ -0.64
Cux1P53564 Olfr981-202ENSMUST00000215956 8197 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Cux1P53564 Map3k7-204ENSMUST00000108184 5491 ntTSL 5 BASIC11.03□□□□□ -0.64
Cux1P53564 3830406C13Rik-206ENSMUST00000223762 2292 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Cux1P53564 Gm9575-201ENSMUST00000122140 1339 ntBASIC11.03□□□□□ -0.64
Cux1P53564 Zfp113-204ENSMUST00000165640 1320 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Cxcr2-202ENSMUST00000106899 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Gm26813-201ENSMUST00000180778 3587 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Xlr5a-203ENSMUST00000114521 1474 ntTSL 5 BASIC11.03□□□□□ -0.64
Cux1P53564 Klra3-202ENSMUST00000111998 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Clec4n-203ENSMUST00000117130 1136 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Gm15696-201ENSMUST00000121730 445 ntBASIC11.03□□□□□ -0.64
Cux1P53564 Pcnp-204ENSMUST00000122253 792 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Gm12227-201ENSMUST00000147847 563 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Acss2os-201ENSMUST00000148685 629 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Gm8439-201ENSMUST00000171482 420 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
Cux1P53564 Gm29784-201ENSMUST00000196217 406 ntBASIC11.03□□□□□ -0.64
Cux1P53564 Gm44565-201ENSMUST00000208194 269 ntBASIC11.03□□□□□ -0.64
Cux1P53564 AC124601.1-201ENSMUST00000220531 135 ntBASIC11.03□□□□□ -0.64
Cux1P53564 AC124537.2-201ENSMUST00000220872 883 ntTSL 5 BASIC11.03□□□□□ -0.64
Cux1P53564 Gm8607-201ENSMUST00000221864 431 ntBASIC11.03□□□□□ -0.64
Cux1P53564 Olfr1440-201ENSMUST00000054567 948 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Cux1P53564 n-R5s95-201ENSMUST00000082684 118 ntBASIC11.03□□□□□ -0.64
Cux1P53564 Gm24032-201ENSMUST00000083932 159 ntBASIC11.03□□□□□ -0.64
Cux1P53564 Gm28955-201ENSMUST00000188167 2166 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Dalir-201ENSMUST00000188773 2170 ntBASIC11.03□□□□□ -0.64
Cux1P53564 Gm28509-201ENSMUST00000189428 2170 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Gm44104-201ENSMUST00000204736 3777 ntBASIC11.03□□□□□ -0.64
Cux1P53564 Mir124a-1hg-201ENSMUST00000180610 4103 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cux1P53564 Nt5c1b-220ENSMUST00000223534 1798 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Cux1P53564 AC124680.1-201ENSMUST00000223923 1585 ntBASIC11.03□□□□□ -0.64
Cux1P53564 Olfr1219-204ENSMUST00000215225 5865 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.64
Cux1P53564 Obox4-ps28-201ENSMUST00000175654 1362 ntBASIC11.02□□□□□ -0.64
Cux1P53564 Lepr-201ENSMUST00000037552 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Cux1P53564 5430403N17Rik-201ENSMUST00000210717 2553 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Cux1P53564 Ccdc180-204ENSMUST00000178561 5081 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.64
Cux1P53564 Pik3cg-201ENSMUST00000053215 5871 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Cux1P53564 Nin-211ENSMUST00000222237 9919 ntAPPRIS P4 TSL 5 BASIC11.02□□□□□ -0.65
Cux1P53564 Gm5113-201ENSMUST00000085668 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cux1P53564 Pp2d1-201ENSMUST00000056198 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cux1P53564 Pomk-201ENSMUST00000061850 3613 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cux1P53564 Cntn5-201ENSMUST00000074133 3297 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Cux1P53564 Tacc2-202ENSMUST00000059145 3906 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Cux1P53564 1110002E22Rik-201ENSMUST00000163080 9741 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Cux1P53564 Fam19a1-201ENSMUST00000075080 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cux1P53564 Nckap5-208ENSMUST00000161954 7090 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cux1P53564 Gm15448-205ENSMUST00000189095 1905 ntTSL 5 BASIC11.02□□□□□ -0.65
Cux1P53564 Gm5601-201ENSMUST00000118909 972 ntBASIC11.02□□□□□ -0.65
Cux1P53564 Gm13807-201ENSMUST00000137073 1295 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Cux1P53564 Mir1953-201ENSMUST00000157866 89 ntBASIC11.02□□□□□ -0.65
Cux1P53564 Ighv1-83-201ENSMUST00000199643 351 ntBASIC11.02□□□□□ -0.65
Cux1P53564 AC122486.1-201ENSMUST00000221562 196 ntTSL 2 BASIC11.02□□□□□ -0.65
Cux1P53564 AC125405.2-201ENSMUST00000227862 383 ntBASIC11.02□□□□□ -0.65
Cux1P53564 Sprr2a3-201ENSMUST00000090872 682 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Cux1P53564 Arhgef9-207ENSMUST00000113885 4578 ntTSL 5 BASIC11.02□□□□□ -0.65
Cux1P53564 Ppp4r4-202ENSMUST00000187155 2675 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Cux1P53564 Efcab6-207ENSMUST00000156187 5012 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cux1P53564 Gm30655-202ENSMUST00000222732 2808 ntTSL 5 BASIC11.02□□□□□ -0.65
Cux1P53564 Myo5c-201ENSMUST00000036555 6727 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Cux1P53564 Dysf-211ENSMUST00000168387 6501 ntTSL 5 BASIC11.02□□□□□ -0.65
Cux1P53564 Myadm-204ENSMUST00000203566 4028 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cux1P53564 Ikzf3-201ENSMUST00000103141 3658 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Cux1P53564 Znfx1-202ENSMUST00000067584 4147 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Cux1P53564 Plekha2-201ENSMUST00000064883 5176 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cux1P53564 A730082K24Rik-203ENSMUST00000205913 1808 ntTSL 2 BASIC11.02□□□□□ -0.65
Cux1P53564 Cdh16-204ENSMUST00000211903 2874 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 71 ms