Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Gm12441-201ENSMUST00000121806 588 ntBASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdc40Q9DC48 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdc40Q9DC48 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdc40Q9DC48 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Cdc40Q9DC48 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdc40Q9DC48 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdc40Q9DC48 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdc40Q9DC48 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdc40Q9DC48 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdc40Q9DC48 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdc40Q9DC48 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cdc40Q9DC48 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdc40Q9DC48 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdc40Q9DC48 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdc40Q9DC48 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cdc40Q9DC48 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdc40Q9DC48 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdc40Q9DC48 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC17.07■□□□□ 0.32
Cdc40Q9DC48 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
Cdc40Q9DC48 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdc40Q9DC48 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdc40Q9DC48 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
Cdc40Q9DC48 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdc40Q9DC48 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Gm7290-201ENSMUST00000104990 617 ntBASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Gm12918-201ENSMUST00000120234 636 ntBASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Gm15710-201ENSMUST00000121821 636 ntBASIC17.05■□□□□ 0.32
Cdc40Q9DC48 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Gm5075-201ENSMUST00000196916 622 ntBASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cdc40Q9DC48 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms