Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Vps28Q9D1C8 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
Vps28Q9D1C8 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Vps28Q9D1C8 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Vps28Q9D1C8 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps28Q9D1C8 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps28Q9D1C8 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC18.89■□□□□ 0.61
Vps28Q9D1C8 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Vps28Q9D1C8 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.89■□□□□ 0.61
Vps28Q9D1C8 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC18.89■□□□□ 0.61
Vps28Q9D1C8 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps28Q9D1C8 Gm13509-201ENSMUST00000119733 1308 ntBASIC18.89■□□□□ 0.61
Vps28Q9D1C8 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps28Q9D1C8 Gm37563-201ENSMUST00000192580 1513 ntBASIC18.89■□□□□ 0.61
Vps28Q9D1C8 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Spcs1-207ENSMUST00000228767 1008 ntBASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps28Q9D1C8 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Gm43859-201ENSMUST00000200075 1412 ntBASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Vps28Q9D1C8 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Gm12441-201ENSMUST00000121806 588 ntBASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Gm4968-201ENSMUST00000071458 858 ntBASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps28Q9D1C8 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps28Q9D1C8 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vps28Q9D1C8 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vps28Q9D1C8 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Vps28Q9D1C8 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC18.84■□□□□ 0.61
Vps28Q9D1C8 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Vps28Q9D1C8 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Vps28Q9D1C8 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vps28Q9D1C8 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vps28Q9D1C8 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Vps28Q9D1C8 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Vps28Q9D1C8 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC18.83■□□□□ 0.61
Vps28Q9D1C8 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Vps28Q9D1C8 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Vps28Q9D1C8 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.83■□□□□ 0.6
Vps28Q9D1C8 Gm26524-201ENSMUST00000192339 390 ntBASIC18.83■□□□□ 0.6
Vps28Q9D1C8 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC18.83■□□□□ 0.6
Vps28Q9D1C8 AC160393.1-201ENSMUST00000218378 1279 ntBASIC18.83■□□□□ 0.6
Vps28Q9D1C8 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.83■□□□□ 0.6
Vps28Q9D1C8 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Vps28Q9D1C8 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Vps28Q9D1C8 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms