Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Ushbp1Q8R370 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ushbp1Q8R370 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ushbp1Q8R370 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ushbp1Q8R370 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ushbp1Q8R370 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.68■□□□□ 0.9
Ushbp1Q8R370 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.68■□□□□ 0.9
Ushbp1Q8R370 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.67■□□□□ 0.9
Ushbp1Q8R370 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ushbp1Q8R370 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Ushbp1Q8R370 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ushbp1Q8R370 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ushbp1Q8R370 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.67■□□□□ 0.9
Ushbp1Q8R370 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ushbp1Q8R370 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.67■□□□□ 0.9
Ushbp1Q8R370 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ushbp1Q8R370 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ushbp1Q8R370 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ushbp1Q8R370 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Gm13148-201ENSMUST00000118892 745 ntBASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Gm8520-201ENSMUST00000186517 868 ntBASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Gm5408-201ENSMUST00000197998 747 ntBASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ushbp1Q8R370 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ushbp1Q8R370 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ushbp1Q8R370 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ushbp1Q8R370 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.65■□□□□ 0.9
Ushbp1Q8R370 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ushbp1Q8R370 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.65■□□□□ 0.9
Ushbp1Q8R370 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ushbp1Q8R370 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Ushbp1Q8R370 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.65■□□□□ 0.9
Ushbp1Q8R370 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ushbp1Q8R370 Gm6365-201ENSMUST00000054711 744 ntBASIC20.65■□□□□ 0.9
Ushbp1Q8R370 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ushbp1Q8R370 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ushbp1Q8R370 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ushbp1Q8R370 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ushbp1Q8R370 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
Ushbp1Q8R370 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.64■□□□□ 0.9
Ushbp1Q8R370 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ushbp1Q8R370 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ushbp1Q8R370 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Ushbp1Q8R370 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ushbp1Q8R370 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.64■□□□□ 0.89
Ushbp1Q8R370 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.64■□□□□ 0.89
Ushbp1Q8R370 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.64■□□□□ 0.89
Ushbp1Q8R370 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ushbp1Q8R370 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ushbp1Q8R370 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ushbp1Q8R370 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ushbp1Q8R370 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Gm19094-201ENSMUST00000209791 1246 ntBASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ushbp1Q8R370 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Gm13534-201ENSMUST00000121169 513 ntBASIC20.62■□□□□ 0.89
Ushbp1Q8R370 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms