Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Gm10461-201ENSMUST00000202073 4786 ntBASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Ccdc28aQ8CEI3 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28aQ8CEI3 AC140930.3-201ENSMUST00000222935 274 ntBASIC19.48■□□□□ 0.71
Ccdc28aQ8CEI3 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28aQ8CEI3 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28aQ8CEI3 Gm42900-201ENSMUST00000197184 2167 ntBASIC19.48■□□□□ 0.71
Ccdc28aQ8CEI3 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ccdc28aQ8CEI3 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Ccdc28aQ8CEI3 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28aQ8CEI3 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Wdr70-203ENSMUST00000227371 1130 ntBASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28aQ8CEI3 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 Mir7075-201ENSMUST00000184187 82 ntBASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Ccdc28aQ8CEI3 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28aQ8CEI3 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28aQ8CEI3 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28aQ8CEI3 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Ccdc28aQ8CEI3 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28aQ8CEI3 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Ccdc28aQ8CEI3 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.42■□□□□ 0.7
Ccdc28aQ8CEI3 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28aQ8CEI3 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Ccdc28aQ8CEI3 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28aQ8CEI3 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28aQ8CEI3 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms