Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Nup88Q8CEC0 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Nup88Q8CEC0 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC21.73■■□□□ 1.07
Nup88Q8CEC0 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Nup88Q8CEC0 Rarb-207ENSMUST00000225921 2756 ntBASIC21.73■■□□□ 1.07
Nup88Q8CEC0 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Nup88Q8CEC0 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC21.73■■□□□ 1.07
Nup88Q8CEC0 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Nup88Q8CEC0 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC21.72■■□□□ 1.07
Nup88Q8CEC0 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Nup88Q8CEC0 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Nup88Q8CEC0 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
Nup88Q8CEC0 Mir5133-201ENSMUST00000174955 77 ntBASIC21.72■■□□□ 1.07
Nup88Q8CEC0 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.72■■□□□ 1.07
Nup88Q8CEC0 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Nup88Q8CEC0 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Nup88Q8CEC0 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Nup88Q8CEC0 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Nup88Q8CEC0 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Nup88Q8CEC0 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Nup88Q8CEC0 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Nup88Q8CEC0 Gm12441-201ENSMUST00000121806 588 ntBASIC21.71■■□□□ 1.07
Nup88Q8CEC0 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC21.71■■□□□ 1.07
Nup88Q8CEC0 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Nup88Q8CEC0 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
Nup88Q8CEC0 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Nup88Q8CEC0 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Nup88Q8CEC0 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Nup88Q8CEC0 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.7■■□□□ 1.06
Nup88Q8CEC0 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Nup88Q8CEC0 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Nup88Q8CEC0 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC21.7■■□□□ 1.06
Nup88Q8CEC0 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Nup88Q8CEC0 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Nup88Q8CEC0 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Nup88Q8CEC0 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Nup88Q8CEC0 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Gm4968-201ENSMUST00000071458 858 ntBASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Nup88Q8CEC0 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Nup88Q8CEC0 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC21.66■■□□□ 1.06
Nup88Q8CEC0 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Nup88Q8CEC0 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Nup88Q8CEC0 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Nup88Q8CEC0 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC21.66■■□□□ 1.06
Nup88Q8CEC0 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Nup88Q8CEC0 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Nup88Q8CEC0 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Nup88Q8CEC0 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nup88Q8CEC0 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nup88Q8CEC0 Gm15853-202ENSMUST00000195518 2041 ntBASIC21.65■■□□□ 1.06
Nup88Q8CEC0 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Nup88Q8CEC0 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nup88Q8CEC0 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nup88Q8CEC0 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nup88Q8CEC0 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Nup88Q8CEC0 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nup88Q8CEC0 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nup88Q8CEC0 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Nup88Q8CEC0 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms