Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim9Q8C7M3 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim9Q8C7M3 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim9Q8C7M3 Gm43672-201ENSMUST00000199072 1731 ntBASIC20.39■□□□□ 0.86
Trim9Q8C7M3 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Trim9Q8C7M3 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Trim9Q8C7M3 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim9Q8C7M3 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim9Q8C7M3 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim9Q8C7M3 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 AC160393.1-201ENSMUST00000218378 1279 ntBASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim9Q8C7M3 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim9Q8C7M3 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim9Q8C7M3 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.36■□□□□ 0.85
Trim9Q8C7M3 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim9Q8C7M3 Gm42569-201ENSMUST00000200539 472 ntBASIC20.36■□□□□ 0.85
Trim9Q8C7M3 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim9Q8C7M3 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC20.36■□□□□ 0.85
Trim9Q8C7M3 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim9Q8C7M3 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim9Q8C7M3 Gm9194-201ENSMUST00000220749 1447 ntBASIC20.36■□□□□ 0.85
Trim9Q8C7M3 Gm35558-201ENSMUST00000222675 2219 ntBASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.35■□□□□ 0.85
Trim9Q8C7M3 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.34■□□□□ 0.85
Trim9Q8C7M3 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trim9Q8C7M3 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim9Q8C7M3 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim9Q8C7M3 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.34■□□□□ 0.85
Trim9Q8C7M3 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim9Q8C7M3 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim9Q8C7M3 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim9Q8C7M3 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.33■□□□□ 0.84
Trim9Q8C7M3 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms