Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim47Q8C0E3 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim47Q8C0E3 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Trim47Q8C0E3 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.5■□□□□ 0.87
Trim47Q8C0E3 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim47Q8C0E3 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim47Q8C0E3 Golph3-205ENSMUST00000228671 2842 ntBASIC20.5■□□□□ 0.87
Trim47Q8C0E3 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim47Q8C0E3 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim47Q8C0E3 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim47Q8C0E3 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim47Q8C0E3 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Gm44549-201ENSMUST00000208351 577 ntBASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Trim47Q8C0E3 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim47Q8C0E3 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim47Q8C0E3 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.45■□□□□ 0.87
Trim47Q8C0E3 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Trim47Q8C0E3 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Trim47Q8C0E3 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Gm37856-201ENSMUST00000191634 999 ntBASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim47Q8C0E3 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim47Q8C0E3 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim47Q8C0E3 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim47Q8C0E3 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim47Q8C0E3 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Trim47Q8C0E3 Gm12896-201ENSMUST00000118430 226 ntBASIC20.44■□□□□ 0.86
Trim47Q8C0E3 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim47Q8C0E3 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim47Q8C0E3 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim47Q8C0E3 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim47Q8C0E3 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim47Q8C0E3 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim47Q8C0E3 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim47Q8C0E3 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
Trim47Q8C0E3 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim47Q8C0E3 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC20.43■□□□□ 0.86
Trim47Q8C0E3 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim47Q8C0E3 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms