Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC21.87■■□□□ 1.09
Trim56Q80VI1 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim56Q80VI1 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim56Q80VI1 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim56Q80VI1 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim56Q80VI1 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Trim56Q80VI1 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Trim56Q80VI1 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trim56Q80VI1 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC21.86■■□□□ 1.09
Trim56Q80VI1 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trim56Q80VI1 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC21.86■■□□□ 1.09
Trim56Q80VI1 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Trim56Q80VI1 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trim56Q80VI1 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trim56Q80VI1 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trim56Q80VI1 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Gm12669-201ENSMUST00000122162 1009 ntBASIC21.85■■□□□ 1.09
Trim56Q80VI1 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Trim56Q80VI1 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim56Q80VI1 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trim56Q80VI1 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trim56Q80VI1 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trim56Q80VI1 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC21.84■■□□□ 1.09
Trim56Q80VI1 AC107452.1-201ENSMUST00000227963 481 ntBASIC21.84■■□□□ 1.09
Trim56Q80VI1 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC21.84■■□□□ 1.09
Trim56Q80VI1 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trim56Q80VI1 Gm42922-201ENSMUST00000195887 2078 ntBASIC21.84■■□□□ 1.09
Trim56Q80VI1 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim56Q80VI1 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Trim56Q80VI1 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim56Q80VI1 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim56Q80VI1 Gm7856-201ENSMUST00000117514 1493 ntBASIC21.83■■□□□ 1.09
Trim56Q80VI1 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
Trim56Q80VI1 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
Trim56Q80VI1 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim56Q80VI1 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim56Q80VI1 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim56Q80VI1 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Trim56Q80VI1 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC21.83■■□□□ 1.09
Trim56Q80VI1 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC21.83■■□□□ 1.09
Trim56Q80VI1 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Trim56Q80VI1 Gm27011-201ENSMUST00000182352 972 ntBASIC21.83■■□□□ 1.09
Trim56Q80VI1 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Trim56Q80VI1 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim56Q80VI1 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
Trim56Q80VI1 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Trim56Q80VI1 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim56Q80VI1 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim56Q80VI1 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Trim56Q80VI1 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC21.82■■□□□ 1.08
Trim56Q80VI1 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC21.82■■□□□ 1.08
Trim56Q80VI1 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trim56Q80VI1 Gm5297-201ENSMUST00000198555 1171 ntBASIC21.82■■□□□ 1.08
Trim56Q80VI1 Gm20049-201ENSMUST00000219950 730 ntBASIC21.82■■□□□ 1.08
Trim56Q80VI1 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim56Q80VI1 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Trim56Q80VI1 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim56Q80VI1 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim56Q80VI1 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 AC140264.2-202ENSMUST00000218746 817 ntBASIC21.81■■□□□ 1.08
Trim56Q80VI1 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim56Q80VI1 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Trim56Q80VI1 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim56Q80VI1 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Trim56Q80VI1 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim56Q80VI1 Gm44549-201ENSMUST00000208351 577 ntBASIC21.8■■□□□ 1.08
Trim56Q80VI1 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC21.8■■□□□ 1.08
Trim56Q80VI1 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim56Q80VI1 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim56Q80VI1 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim56Q80VI1 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC21.8■■□□□ 1.08
Trim56Q80VI1 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Trim56Q80VI1 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC21.8■■□□□ 1.08
Trim56Q80VI1 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim56Q80VI1 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trim56Q80VI1 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trim56Q80VI1 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim56Q80VI1 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms