Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx55Q6ZPL9 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC21.16■□□□□ 0.98
Ddx55Q6ZPL9 Gm3375-201ENSMUST00000203929 796 ntBASIC21.16■□□□□ 0.98
Ddx55Q6ZPL9 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ddx55Q6ZPL9 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddx55Q6ZPL9 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddx55Q6ZPL9 Gm43006-201ENSMUST00000197702 1602 ntBASIC21.15■□□□□ 0.98
Ddx55Q6ZPL9 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ddx55Q6ZPL9 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Ddx55Q6ZPL9 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC21.15■□□□□ 0.98
Ddx55Q6ZPL9 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ddx55Q6ZPL9 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Ddx55Q6ZPL9 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Ddx55Q6ZPL9 Gm7712-202ENSMUST00000222331 1510 ntBASIC21.14■□□□□ 0.98
Ddx55Q6ZPL9 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Ddx55Q6ZPL9 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ddx55Q6ZPL9 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC21.14■□□□□ 0.98
Ddx55Q6ZPL9 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ddx55Q6ZPL9 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddx55Q6ZPL9 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Ddx55Q6ZPL9 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC21.14■□□□□ 0.97
Ddx55Q6ZPL9 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ddx55Q6ZPL9 Timm23-208ENSMUST00000226683 750 ntBASIC21.14■□□□□ 0.97
Ddx55Q6ZPL9 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddx55Q6ZPL9 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddx55Q6ZPL9 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Ddx55Q6ZPL9 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddx55Q6ZPL9 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ddx55Q6ZPL9 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Gm7889-201ENSMUST00000185591 958 ntBASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ddx55Q6ZPL9 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC21.12■□□□□ 0.97
Ddx55Q6ZPL9 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddx55Q6ZPL9 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
Ddx55Q6ZPL9 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC21.12■□□□□ 0.97
Ddx55Q6ZPL9 Otx2os1-204ENSMUST00000227221 751 ntBASIC21.12■□□□□ 0.97
Ddx55Q6ZPL9 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddx55Q6ZPL9 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddx55Q6ZPL9 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ddx55Q6ZPL9 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Ddx55Q6ZPL9 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx55Q6ZPL9 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx55Q6ZPL9 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx55Q6ZPL9 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx55Q6ZPL9 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC21.11■□□□□ 0.97
Ddx55Q6ZPL9 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Ddx55Q6ZPL9 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC21.11■□□□□ 0.97
Ddx55Q6ZPL9 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx55Q6ZPL9 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx55Q6ZPL9 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddx55Q6ZPL9 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 Gm6659-201ENSMUST00000174752 547 ntBASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 Gm21362-201ENSMUST00000194272 928 ntBASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 Gm10819-201ENSMUST00000099988 561 ntBASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ddx55Q6ZPL9 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Ddx55Q6ZPL9 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.97
Ddx55Q6ZPL9 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Ddx55Q6ZPL9 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC21.08■□□□□ 0.97
Ddx55Q6ZPL9 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
Ddx55Q6ZPL9 Gm12382-201ENSMUST00000122005 922 ntBASIC21.08■□□□□ 0.97
Ddx55Q6ZPL9 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ddx55Q6ZPL9 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC21.08■□□□□ 0.97
Ddx55Q6ZPL9 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Ddx55Q6ZPL9 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ddx55Q6ZPL9 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC21.08■□□□□ 0.96
Ddx55Q6ZPL9 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Ddx55Q6ZPL9 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddx55Q6ZPL9 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms