Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Npc1l1Q6T3U4 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Npc1l1Q6T3U4 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Npc1l1Q6T3U4 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Npc1l1Q6T3U4 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Npc1l1Q6T3U4 Gm7856-201ENSMUST00000117514 1493 ntBASIC22.2■■□□□ 1.14
Npc1l1Q6T3U4 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Npc1l1Q6T3U4 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC22.2■■□□□ 1.14
Npc1l1Q6T3U4 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC22.2■■□□□ 1.14
Npc1l1Q6T3U4 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Npc1l1Q6T3U4 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Npc1l1Q6T3U4 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Npc1l1Q6T3U4 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Npc1l1Q6T3U4 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Npc1l1Q6T3U4 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Npc1l1Q6T3U4 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Npc1l1Q6T3U4 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Npc1l1Q6T3U4 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Npc1l1Q6T3U4 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Npc1l1Q6T3U4 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Npc1l1Q6T3U4 Gm29241-201ENSMUST00000189260 1096 ntBASIC22.19■■□□□ 1.14
Npc1l1Q6T3U4 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Npc1l1Q6T3U4 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC22.19■■□□□ 1.14
Npc1l1Q6T3U4 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC22.19■■□□□ 1.14
Npc1l1Q6T3U4 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Gm5643-201ENSMUST00000117081 966 ntBASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Gm22325-201ENSMUST00000158904 308 ntBASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC22.18■■□□□ 1.14
Npc1l1Q6T3U4 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Npc1l1Q6T3U4 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Npc1l1Q6T3U4 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC22.17■■□□□ 1.14
Npc1l1Q6T3U4 Gm2559-201ENSMUST00000201323 363 ntBASIC22.17■■□□□ 1.14
Npc1l1Q6T3U4 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Npc1l1Q6T3U4 Dio3-201ENSMUST00000097228 1449 ntBASIC22.17■■□□□ 1.14
Npc1l1Q6T3U4 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Npc1l1Q6T3U4 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC22.17■■□□□ 1.14
Npc1l1Q6T3U4 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 Gm43231-201ENSMUST00000202960 2258 ntBASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Npc1l1Q6T3U4 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC22.15■■□□□ 1.14
Npc1l1Q6T3U4 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Npc1l1Q6T3U4 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Npc1l1Q6T3U4 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC22.15■■□□□ 1.14
Npc1l1Q6T3U4 Gm37805-201ENSMUST00000192612 1094 ntBASIC22.15■■□□□ 1.14
Npc1l1Q6T3U4 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Npc1l1Q6T3U4 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Npc1l1Q6T3U4 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Npc1l1Q6T3U4 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Npc1l1Q6T3U4 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Npc1l1Q6T3U4 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Npc1l1Q6T3U4 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
Npc1l1Q6T3U4 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Npc1l1Q6T3U4 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Npc1l1Q6T3U4 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
Npc1l1Q6T3U4 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Npc1l1Q6T3U4 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Npc1l1Q6T3U4 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Npc1l1Q6T3U4 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
Npc1l1Q6T3U4 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC22.14■■□□□ 1.13
Npc1l1Q6T3U4 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Npc1l1Q6T3U4 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Npc1l1Q6T3U4 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC22.13■■□□□ 1.13
Npc1l1Q6T3U4 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC22.13■■□□□ 1.13
Npc1l1Q6T3U4 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
Npc1l1Q6T3U4 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Npc1l1Q6T3U4 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC22.12■■□□□ 1.13
Npc1l1Q6T3U4 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
Npc1l1Q6T3U4 AC107452.1-201ENSMUST00000227963 481 ntBASIC22.12■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 90.4 ms