Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Smarca1Q6PGB8 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarca1Q6PGB8 Grk6-206ENSMUST00000224995 2971 ntBASIC20.55■□□□□ 0.88
Smarca1Q6PGB8 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Smarca1Q6PGB8 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarca1Q6PGB8 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarca1Q6PGB8 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarca1Q6PGB8 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarca1Q6PGB8 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarca1Q6PGB8 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Smarca1Q6PGB8 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarca1Q6PGB8 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Smarca1Q6PGB8 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarca1Q6PGB8 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smarca1Q6PGB8 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
Smarca1Q6PGB8 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
Smarca1Q6PGB8 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
Smarca1Q6PGB8 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarca1Q6PGB8 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarca1Q6PGB8 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarca1Q6PGB8 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarca1Q6PGB8 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Smarca1Q6PGB8 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarca1Q6PGB8 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.5■□□□□ 0.87
Smarca1Q6PGB8 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.5■□□□□ 0.87
Smarca1Q6PGB8 Gm13148-201ENSMUST00000118892 745 ntBASIC20.5■□□□□ 0.87
Smarca1Q6PGB8 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarca1Q6PGB8 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarca1Q6PGB8 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Gm12441-201ENSMUST00000121806 588 ntBASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Gm6211-202ENSMUST00000167849 925 ntBASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarca1Q6PGB8 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms