Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Snrnp40Q6PE01 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Snrnp40Q6PE01 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Snrnp40Q6PE01 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Gm21362-201ENSMUST00000194272 928 ntBASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Gm18025-201ENSMUST00000221733 862 ntBASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC16.29■□□□□ 0.2
Snrnp40Q6PE01 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Gm13559-201ENSMUST00000120476 863 ntBASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Gm42545-201ENSMUST00000202755 922 ntBASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Snrnp40Q6PE01 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Snrnp40Q6PE01 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Snrnp40Q6PE01 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Snrnp40Q6PE01 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Snrnp40Q6PE01 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Snrnp40Q6PE01 Gm15375-201ENSMUST00000119510 849 ntBASIC16.27■□□□□ 0.2
Snrnp40Q6PE01 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Snrnp40Q6PE01 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Snrnp40Q6PE01 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Snrnp40Q6PE01 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Snrnp40Q6PE01 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Snrnp40Q6PE01 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Snrnp40Q6PE01 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC16.27■□□□□ 0.19
Snrnp40Q6PE01 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Gm11539-201ENSMUST00000119837 557 ntBASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Gm13436-201ENSMUST00000120418 567 ntBASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Gm45560-201ENSMUST00000211492 1472 ntBASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Gm8309-201ENSMUST00000206627 1448 ntBASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Snrnp40Q6PE01 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Snrnp40Q6PE01 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Snrnp40Q6PE01 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Snrnp40Q6PE01 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Snrnp40Q6PE01 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC16.25■□□□□ 0.19
Snrnp40Q6PE01 Gm10819-201ENSMUST00000099988 561 ntBASIC16.25■□□□□ 0.19
Snrnp40Q6PE01 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Snrnp40Q6PE01 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Snrnp40Q6PE01 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Snrnp40Q6PE01 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Odf3b-204ENSMUST00000227834 930 ntBASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Snrnp40Q6PE01 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Snrnp40Q6PE01 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Snrnp40Q6PE01 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Snrnp40Q6PE01 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Snrnp40Q6PE01 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Snrnp40Q6PE01 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Snrnp40Q6PE01 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Snrnp40Q6PE01 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC16.23■□□□□ 0.19
Snrnp40Q6PE01 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms